| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma12g00630.1 |
| Family | GH28 |
| Protein Properties | Length: 395 Molecular Weight: 41954.3 Isoelectric Point: 6.7572 |
| Chromosome | Chromosome/Scaffold: 12 Start: 289679 End: 291701 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 59 | 381 | 0 |
| CAMKNGAATLKVPPGKTFMLKPLQFSGPCSFSSVHFQLEGDVVAPKSTEAWKGQDSSKWIDFSNVDGLIIDGGGQIDGSGSVWWNSCKVKSCSRPTALSI HNCNNLQLTGTRHLNSARNHISINNSNHTHIFNVTITAPQDSPNTDGIDVSQSSYILIQRSTIATGDDCIAMNSGTSYVNITGITCGPGHGISVGSLGKK GTCQTVEHVHVSNCNFKGADNGMRIKTWPGGCGYARNIKFEHIVLTNTKNPIIIDQDYENTSEVQISGVTYRYVNGTCNSETAIILNCGAGAGCTDIFMD LVNITSTSSGSNVLASCNNAHGV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 395 Download |
| MEVLIAIFFL LYLVSHCSCS RLREAAINLN TFNVMDYGAI GDGLTDDSQA FLKAWSMVCA 60 MKNGAATLKV PPGKTFMLKP LQFSGPCSFS SVHFQLEGDV VAPKSTEAWK GQDSSKWIDF 120 SNVDGLIIDG GGQIDGSGSV WWNSCKVKSC SRPTALSIHN CNNLQLTGTR HLNSARNHIS 180 INNSNHTHIF NVTITAPQDS PNTDGIDVSQ SSYILIQRST IATGDDCIAM NSGTSYVNIT 240 GITCGPGHGI SVGSLGKKGT CQTVEHVHVS NCNFKGADNG MRIKTWPGGC GYARNIKFEH 300 IVLTNTKNPI IIDQDYENTS EVQISGVTYR YVNGTCNSET AIILNCGAGA GCTDIFMDLV 360 NITSTSSGSN VLASCNNAHG VAASTSPPVS CLSL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-73 | 72 | 384 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 8.0e-81 | 31 | 388 | 372 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 4.0e-81 | 32 | 393 | 375 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 1.0e-96 | 27 | 385 | 367 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 9.0e-101 | 30 | 394 | 377 | + Probable polygalacturonase At3g15720 | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAY21049.1 | 0 | 1 | 393 | 1 | 397 | PGN [Glycine max] |
| GenBank | ABC75354.1 | 0 | 1 | 392 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ABO81149.1 | 0 | 35 | 393 | 1 | 369 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| EMBL | CBI36307.1 | 0 | 1 | 392 | 1 | 402 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002324855.1 | 0 | 32 | 394 | 27 | 396 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 2e-28 | 44 | 350 | 5 | 308 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 2e-28 | 44 | 350 | 5 | 308 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 2e-28 | 44 | 350 | 5 | 308 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 2e-28 | 44 | 350 | 5 | 308 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 2e-28 | 44 | 350 | 5 | 308 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
