Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma12g01480.1 |
Family | GH28 |
Protein Properties | Length: 441 Molecular Weight: 48189.4 Isoelectric Point: 7.9188 |
Chromosome | Chromosome/Scaffold: 12 Start: 890997 End: 894304 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 97 | 427 | 0 |
ACSRGAILVVPENRIYRLKPIIFSGPCRPNTAFMLYGTIEAWSQMSAYQEDRQHWIVFDSVSNFRVGGGGTFNGKGKKWWQSSCKVNTNLPCNDGPRPKA VTFYQCNNLKVTNLRFKDAPQMHVVFEGCFNVIVSNLVIRAPGDSPNTDGIHVADTQNIVISNSDIGTGDDCISIISGSQNVRATDITCGPGHGISIGSL GADNSEAEVSNVVVNRATLTGTTNGVRIKTWQGGSGYARNIKFLNIAMQNVTNPIIIDQYYCDQSKPCQEQDSAVQLSNVLYQNIKGTSASEVAIKFDCS RAVPCRQIYVQDVILEPQGHGGTIATCEHVS |
Full Sequence |
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Protein Sequence Length: 441 Download |
MSPQTPTIPL FIVLASLVLC NGYYLEESFY KTNAKHYPVH DGRLIKTKHE HFGLITRANR 60 ASHLTSRPRG TVSVDDFGAK ADGSDDSEAF GKAWNEACSR GAILVVPENR IYRLKPIIFS 120 GPCRPNTAFM LYGTIEAWSQ MSAYQEDRQH WIVFDSVSNF RVGGGGTFNG KGKKWWQSSC 180 KVNTNLPCND GPRPKAVTFY QCNNLKVTNL RFKDAPQMHV VFEGCFNVIV SNLVIRAPGD 240 SPNTDGIHVA DTQNIVISNS DIGTGDDCIS IISGSQNVRA TDITCGPGHG ISIGSLGADN 300 SEAEVSNVVV NRATLTGTTN GVRIKTWQGG SGYARNIKFL NIAMQNVTNP IIIDQYYCDQ 360 SKPCQEQDSA VQLSNVLYQN IKGTSASEVA IKFDCSRAVP CRQIYVQDVI LEPQGHGGTI 420 ATCEHVSYVN RGKFFPQCTP * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-84 | 56 | 436 | 394 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 1.0e-85 | 72 | 421 | 357 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 5.0e-104 | 98 | 426 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-118 | 54 | 436 | 389 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-133 | 7 | 439 | 438 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC70314.1 | 0 | 1 | 440 | 1 | 440 | polygalacturonase precursor [Glycine max] |
RefSeq | XP_002308956.1 | 0 | 24 | 438 | 21 | 442 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313308.1 | 0 | 72 | 439 | 9 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 45 | 438 | 55 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529616.1 | 0 | 65 | 438 | 101 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-23 | 151 | 357 | 102 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 3e-18 | 165 | 384 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-18 | 165 | 384 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-18 | 165 | 384 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-18 | 165 | 384 | 77 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |