Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma12g35950.2 |
Family | GT4 |
Protein Properties | Length: 360 Molecular Weight: 39998 Isoelectric Point: 7.8532 |
Chromosome | Chromosome/Scaffold: 12 Start: 39059313 End: 39063607 |
Description | UDP-Glycosyltransferase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT4 | 164 | 326 | 8.60001e-40 |
FLSINRFERKKNIQLAISAFAMLNSPEGVLKHKDITNASLTIAGGFDKRLKENVEYLEELKDLAEKEGVSNKIRFITSCSTAERNELLSECLCVLYTPKD EHFGIVPLEAMAAYKPVIACNSGGPVESIKNGVTGFLCDPTPQEFSLAMAKLINDPQEAERMG |
Full Sequence |
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Protein Sequence Length: 360 Download |
MAKGATSKLN IAIIHPDLGI GGAERLIVDA AVELASQGHK VHVFTAHHDK NRCFEETVAD 60 QVSVVIPILK LKRSTKVVFY CHFPDLLLAQ HSTFIRRMYR KPIDLAEEIT TGMADLILVN 120 SKFTASTFAN TFKYLDAKGI RPAVLYPAVN VDQFNEPSSF KLNFLSINRF ERKKNIQLAI 180 SAFAMLNSPE GVLKHKDITN ASLTIAGGFD KRLKENVEYL EELKDLAEKE GVSNKIRFIT 240 SCSTAERNEL LSECLCVLYT PKDEHFGIVP LEAMAAYKPV IACNSGGPVE SIKNGVTGFL 300 CDPTPQEFSL AMAKLINDPQ EAERMGREAR RHVAESFSTK SFGQHLNRYL VDIHRGKED* 360 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG0438 | RfaG | 6.0e-36 | 8 | 357 | 400 | + Glycosyltransferase [Cell envelope biogenesis, outer membrane] |
cd03798 | GT1_wlbH_like | 2.0e-36 | 9 | 346 | 396 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. |
cd03811 | GT1_WabH_like | 1.0e-37 | 10 | 338 | 372 | + This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core. |
cd03801 | GT1_YqgM_like | 8.0e-47 | 10 | 338 | 381 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. |
cd03805 | GT1_ALG2_like | 8.0e-179 | 9 | 346 | 399 | + This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM26674.1 | 0 | 1 | 353 | 1 | 396 | At1g78800/F9K20_16 [Arabidopsis thaliana] |
GenBank | ACU21459.1 | 0 | 1 | 359 | 1 | 407 | unknown [Glycine max] |
RefSeq | NP_178001.2 | 0 | 1 | 353 | 1 | 396 | glycosyl transferase family 1 protein [Arabidopsis thaliana] |
RefSeq | XP_002317454.1 | 0 | 8 | 359 | 4 | 413 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525620.1 | 0 | 1 | 359 | 1 | 408 | alpha-1,3-mannosyltransferase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2f9f_A | 8e-17 | 156 | 324 | 13 | 168 | A Chain A, Crystal Structure Of The Putative Mannosyl Transferase (Wbaz-1)from Archaeoglobus Fulgidus, Northeast Structural Genomics Target Gr29a |
PDB | 3c4v_B | 0.000000000001 | 21 | 347 | 22 | 399 | A Chain A, Crystal Structure Of The Putative Mannosyl Transferase (Wbaz-1)from Archaeoglobus Fulgidus, Northeast Structural Genomics Target Gr29a |
PDB | 3c4v_A | 0.000000000001 | 21 | 347 | 22 | 399 | A Chain A, Crystal Structure Of The Putative Mannosyl Transferase (Wbaz-1)from Archaeoglobus Fulgidus, Northeast Structural Genomics Target Gr29a |
PDB | 3c4q_B | 0.000000000001 | 21 | 347 | 22 | 399 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The First Step In Mycothiol Biosynthesis. Organism : Corynebacterium Glutamicum- Complex With Udp |
PDB | 3c4q_A | 0.000000000001 | 21 | 347 | 22 | 399 | A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The First Step In Mycothiol Biosynthesis. Organism : Corynebacterium Glutamicum- Complex With Udp |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
dolichyl-diphosphooligosaccharide biosynthesis | RXN-5462 | EC-2.4.1.132 | GDP-Man:Man1GlcNAc2-PP-Dol α-1,3-mannosyltransferase |
dolichyl-diphosphooligosaccharide biosynthesis | RXN-5463 | EC-2.4.1.257 | GDP-Man:Man2GlcNAc2-PP-Dol α-1,6-mannosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EG522343 | 279 | 54 | 331 | 0 |
DR942573 | 272 | 89 | 360 | 0 |
EV263639 | 220 | 43 | 262 | 0 |
CV290429 | 272 | 81 | 352 | 0 |
EV263639 | 39 | 255 | 293 | 0.0000000001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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