y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma13g05150.1 |
Family | PL1 |
Protein Properties | Length: 444 Molecular Weight: 49045 Isoelectric Point: 8.6909 |
Chromosome | Chromosome/Scaffold: 13 Start: 5404298 End: 5407166 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 167 | 363 | 0 |
GHSMIISLRQELMISSDKTIDGRGANVQFRGGAGLTIQFVNNVIIHGVRIKDIVPKDGGMIRDSADHYGLRTRSDGDAISIFGSTNIWIDHVSLSNCADG LIDIIQGSTAITISNCHMTKHNDVFLFGASDSYNGDKIMQITVAFNHFGQGLVQRMPRCRWGFVHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAP |
Full Sequence |
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Protein Sequence Length: 444 Download |
MERIMVGSAT KVAFTLLATF AIVIPCLEAG IAEFDDFLKA QADEAHKIAL DSYVPEPHDV 60 AHELNFHVHM ALENSTRREL RQRKLRGGGK CQASNPIDAC WRCNKDWAND RFRLAKCGKG 120 FGRRATGGLG GPIYVVTDNS DDDMVNPKPG TIRHAVTQKG PLWIIFGHSM IISLRQELMI 180 SSDKTIDGRG ANVQFRGGAG LTIQFVNNVI IHGVRIKDIV PKDGGMIRDS ADHYGLRTRS 240 DGDAISIFGS TNIWIDHVSL SNCADGLIDI IQGSTAITIS NCHMTKHNDV FLFGASDSYN 300 GDKIMQITVA FNHFGQGLVQ RMPRCRWGFV HVLNNDYTHW LMYAIGGSSG PTILSQGNRF 360 IAPNNDNAKE ITHRDYAGPD VWKNWQWQSE MDLFMNGAKF VTSGSPIKMT YKKGLIMKPR 420 DGTHVSRLTR HAGALNCFVG KPC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 3.0e-13 | 30 | 80 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 5.0e-30 | 177 | 360 | 197 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-65 | 176 | 360 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-77 | 170 | 364 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAA86241.1 | 0 | 5 | 443 | 1 | 450 | pectate lyase homolog [Medicago sativa] |
GenBank | ACU23277.1 | 0 | 1 | 443 | 1 | 443 | unknown [Glycine max] |
EMBL | CAN79927.1 | 0 | 22 | 443 | 19 | 439 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 16 | 443 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 4 | 443 | 1 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 95 | 435 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 95 | 435 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-22 | 126 | 361 | 22 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 2e-18 | 175 | 364 | 73 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 3e-17 | 175 | 360 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |