Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma13g17170.1 |
Family | GH28 |
Protein Properties | Length: 492 Molecular Weight: 54963.1 Isoelectric Point: 9.1387 |
Chromosome | Chromosome/Scaffold: 13 Start: 20968777 End: 20976568 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 104 | 452 | 0 |
KKGGAQLNVPPGRWLTAPFNLTSHMTLFLAEDAVILGIDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQHLKDVVITGHNGTINGQGQTWWKKYRQKR LNHTRGPLVQIMFSSDIVITNITLRDSPFWTLHPYDCKNITIKGVTILAPVFGAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYGRPSM NIMIRNLVVRSMVSAGISIGSEMSGGVSNVMVENILIWDSRRGVRIKTARGRGAYVRQITYRNITFENVRVGIVMKTDYNEHPDDGYDPMALPILRDISF TTVHGQGVRVPVRIHGSEEIPVRNVTFQDMSVGLTYKKKHIFQCAFVQG |
Full Sequence |
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Protein Sequence Length: 492 Download |
MVENSTLGRF HHQRLDLRRW VPAFFTSHKT LLTFLWIAAF ASVFLWQRNI AGGFLVYGGI 60 PARPMPMLRP MAFNLTDFGG VGDGVTLNTE AFKRAVSAVS KFGKKGGAQL NVPPGRWLTA 120 PFNLTSHMTL FLAEDAVILG IDDEKYWPLM PPLPSYGYGR EHPGPRYGSL IHGQHLKDVV 180 ITGHNGTING QGQTWWKKYR QKRLNHTRGP LVQIMFSSDI VITNITLRDS PFWTLHPYDC 240 KNITIKGVTI LAPVFGAPNT DGIDPDSCED MLIEDCYISV GDDAIAIKSG WDQYGIAYGR 300 PSMNIMIRNL VVRSMVSAGI SIGSEMSGGV SNVMVENILI WDSRRGVRIK TARGRGAYVR 360 QITYRNITFE NVRVGIVMKT DYNEHPDDGY DPMALPILRD ISFTTVHGQG VRVPVRIHGS 420 EEIPVRNVTF QDMSVGLTYK KKHIFQCAFV QGRVIGTIYP APCENLDRYN EQGQLVKHSA 480 SQNVTDIDYD I* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-23 | 73 | 463 | 409 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 4.0e-30 | 73 | 435 | 373 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 3.0e-33 | 73 | 463 | 411 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-37 | 171 | 442 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 6.0e-64 | 73 | 374 | 325 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 1 | 490 | 1 | 508 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 1 | 490 | 1 | 492 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 9 | 490 | 12 | 494 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 9 | 490 | 12 | 494 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 1 | 490 | 2 | 493 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 66 | 432 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 66 | 432 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 66 | 432 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 66 | 432 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-17 | 117 | 430 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |