Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma13g17390.2 |
Family | CE8 |
Protein Properties | Length: 354 Molecular Weight: 38684.8 Isoelectric Point: 9.2026 |
Chromosome | Chromosome/Scaffold: 13 Start: 21148271 End: 21151715 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 39 | 342 | 0 |
VRVRRDGAGDFRTVTDAVNSIPSGNKRRVVVWIGRGVYREKITVDRSKPFVTFYGERNGNDNDNDSRDIMPIITYDATALRYGTVDSATVAVDADYFVAV NVAFVNSSPRPEENSVGAQALAMRISGDKAAFFNCKFIGFQDTLCDDKGRHFFKDCYIQGTYDFIFGNGKSIYLVGLTYRSTIESVANGLSVITAQGRES MAEDTGFTFLHCNITGSGNGNTYLGRAWKKSPRVVFAYTYMGSLINTQGWFNNQVAHAKSNNQTIYYGEYRCMGPGAVSSGRVKFRKILSKEEAKPFLSM AYIH |
Full Sequence |
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Protein Sequence Length: 354 Download |
MMGHVESGAT CLVALSLALH LVSATTTSSS LDVGAVRVVR VRRDGAGDFR TVTDAVNSIP 60 SGNKRRVVVW IGRGVYREKI TVDRSKPFVT FYGERNGNDN DNDSRDIMPI ITYDATALRY 120 GTVDSATVAV DADYFVAVNV AFVNSSPRPE ENSVGAQALA MRISGDKAAF FNCKFIGFQD 180 TLCDDKGRHF FKDCYIQGTY DFIFGNGKSI YLVGLTYRST IESVANGLSV ITAQGRESMA 240 EDTGFTFLHC NITGSGNGNT YLGRAWKKSP RVVFAYTYMG SLINTQGWFN NQVAHAKSNN 300 QTIYYGEYRC MGPGAVSSGR VKFRKILSKE EAKPFLSMAY IHGGTWVVPP PKL* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 9.0e-79 | 49 | 349 | 301 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 5.0e-84 | 49 | 347 | 299 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 1.0e-86 | 49 | 349 | 311 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 1.0e-101 | 49 | 349 | 308 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 4.0e-175 | 49 | 353 | 306 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI27759.1 | 0 | 36 | 351 | 93 | 388 | unnamed protein product [Vitis vinifera] |
EMBL | CBI38547.1 | 0 | 35 | 353 | 65 | 365 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277518.1 | 0 | 36 | 351 | 81 | 376 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002326144.1 | 0 | 36 | 353 | 76 | 374 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516214.1 | 0 | 35 | 353 | 77 | 378 | Pectinesterase-3 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 9.80909e-45 | 39 | 347 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1.99993e-41 | 41 | 347 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-18 | 49 | 351 | 18 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-18 | 49 | 351 | 18 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-18 | 49 | 351 | 18 | 342 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |