| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma13g19670.2 |
| Family | PL1 |
| Protein Properties | Length: 367 Molecular Weight: 40855.1 Isoelectric Point: 8.1551 |
| Chromosome | Chromosome/Scaffold: 13 Start: 23154699 End: 23157759 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 98 | 277 | 0 |
| IVFEVSGTIQLSSYLNVSSHKTIDGRGQRIKLSGKGLRLKECEHVIICNLEFEGGRGHDVDAIQIKPNSKHIWIDRCTLSDFDDGLIDITRESTDITISR CHFSQHDKAMLIGADPTHVGDRCMRVTIHHCFFNGTRQRQPRVRFAKVHLYNNYIRNWGIYAVCASVESQIFSQHNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 367 Download |
| MGNSHGHRHR KHGNSVPPNT VPPPHKYNPH PTTSNSTMLS LPYTHVDTTL RSLAAQAEGF 60 GRFAIGGLHG PLHPVTSLAD DGPGSLRDAC RRKEPLWIVF EVSGTIQLSS YLNVSSHKTI 120 DGRGQRIKLS GKGLRLKECE HVIICNLEFE GGRGHDVDAI QIKPNSKHIW IDRCTLSDFD 180 DGLIDITRES TDITISRCHF SQHDKAMLIG ADPTHVGDRC MRVTIHHCFF NGTRQRQPRV 240 RFAKVHLYNN YIRNWGIYAV CASVESQIFS QHNIYEAGQK KVAFKYLTEK AADKEVGATG 300 TIRSEGDIFL NGAQKGLMTE DVGCNMFHPS EHYPSWTVEA PTDDLKQILH HCTGWQSLAK 360 PADQTL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 7.0e-40 | 93 | 273 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 1.0e-47 | 66 | 343 | 297 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 2.0e-66 | 112 | 278 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 1 | 366 | 1 | 383 | unknown [Populus trichocarpa] |
| GenBank | ABK96132.1 | 0 | 1 | 366 | 1 | 386 | unknown [Populus trichocarpa] |
| RefSeq | XP_002277576.1 | 0 | 1 | 364 | 1 | 369 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309435.1 | 0 | 40 | 366 | 4 | 330 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323433.1 | 0 | 40 | 366 | 4 | 330 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 1.00053e-42 | 47 | 313 | 15 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 1.00053e-42 | 47 | 313 | 15 | 307 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 5e-27 | 114 | 275 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 3e-26 | 99 | 275 | 49 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 1e-23 | 94 | 276 | 46 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY275282 | 327 | 38 | 363 | 0 |
| DW066041 | 301 | 62 | 362 | 0 |
| DY289690 | 322 | 25 | 343 | 0 |
| JG177860 | 304 | 58 | 361 | 0 |
| JG223264 | 280 | 40 | 319 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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