| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma13g20890.1 |
| Family | PL1 |
| Protein Properties | Length: 478 Molecular Weight: 52469.2 Isoelectric Point: 6.3719 |
| Chromosome | Chromosome/Scaffold: 13 Start: 24404484 End: 24410291 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 137 | 337 | 0 |
| LWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNANVRSSPEHYGYRTESDGDGISIFGSRDIWIDHCTLS RCKDGLIDAVMGSSAITISNNHFSHHNDVMLLGHSDHYLPDSGMQVTIGFNHFGEGLVQRMPRCRRGYIHVVNNDFTRWEMYAIGGSAGPTINSQGNRYT A | |||
| Full Sequence |
|---|
| Protein Sequence Length: 478 Download |
| MLQTTCIILF SVVAIFLPHG TAMLNLTLPG QHPDPEAVAR EVHRKVNASM ARREMLGVSE 60 KEVASCLTGN PIDDCWKCDP DWANNRQRLA DCAIGFGQNA KGGKGGQFYI VTDSSDEDPV 120 NPKPGTLRYA VIQNEPLWIV FPSNMMIKLS QELIFNSYKT IDGRGADVHI VGGGCITLQY 180 ISNVIIHNIH IHHCHPSGNA NVRSSPEHYG YRTESDGDGI SIFGSRDIWI DHCTLSRCKD 240 GLIDAVMGSS AITISNNHFS HHNDVMLLGH SDHYLPDSGM QVTIGFNHFG EGLVQRMPRC 300 RRGYIHVVNN DFTRWEMYAI GGSAGPTINS QGNRYTAPED PYAKQVTKRL DAGEGEWSGW 360 NWRSEGDVLL NGAFFVASGA VAEPNYQNAY STQPKNVDRI SLLTMSAGVL GVARDNNLGM 420 WIRGPNDGTV YFSDSGPEYT DEMSRSTMPL LPSRILILVS ALLCFLGHTT TLTTLPN* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-23 | 157 | 333 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-58 | 151 | 335 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-67 | 144 | 338 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61400.1 | 0 | 1 | 462 | 1 | 467 | pectate lyase-like protein [Arabidopsis thaliana] |
| EMBL | CAB64222.1 | 0 | 22 | 471 | 4 | 457 | pectate lyase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_566979.1 | 0 | 1 | 462 | 2 | 468 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002265853.1 | 0 | 1 | 421 | 115 | 535 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002519460.1 | 0 | 1 | 465 | 1 | 468 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 70 | 410 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 70 | 410 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 9e-20 | 89 | 335 | 2 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.000000000000002 | 160 | 336 | 135 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1bn8_A | 0.0000000000004 | 160 | 380 | 151 | 383 | A Chain A, Bacillus Subtilis Pectate Lyase |
