y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma13g23020.3 |
Family | GT47 |
Protein Properties | Length: 488 Molecular Weight: 55973.5 Isoelectric Point: 8.3867 |
Chromosome | Chromosome/Scaffold: 13 Start: 26490580 End: 26494427 |
Description | xylogalacturonan deficient 1 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 150 | 437 | 0 |
KRFKVWVYQEGEQPLVHDGPVNNIYAIEGQFMDEMDNNGKWSQFRARHPEEAHVFFLPISIANVVHYVYKPILKQSDYEPVRLQHLVEDYIGVIQDKYPY WNRSIGADHFLLSCHDWGPKVSYGNPELFQTFIRALCNANTSEGFHPNRDVSIPEVYLPVGKLGPASLGQHPNSRTTLAFFAGGVHGEIRKILLKHWKDK DNEVLVHEYLPKGQDYTKLMGQSKFCLCPSGHEVASPRVVEAIHAGCVPVIICDNYSLPFSDVLNWSQFSVEIPVEKIPEIKSILQSI |
Full Sequence |
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Protein Sequence Length: 488 Download |
MECSRCSISA LLFPLFFVVL SFIFFSPFKE QNHLTQFALA PPLVLSTIKN LNNHTNITSP 60 SPSPQPPPLE LLSNFTPAND TYMYSGTVQI QDLTSLEKIE ESLAQARASI QESILSRNYT 120 SQRREIFVPK GSIYRNPHAF LHRSHIEMVK RFKVWVYQEG EQPLVHDGPV NNIYAIEGQF 180 MDEMDNNGKW SQFRARHPEE AHVFFLPISI ANVVHYVYKP ILKQSDYEPV RLQHLVEDYI 240 GVIQDKYPYW NRSIGADHFL LSCHDWGPKV SYGNPELFQT FIRALCNANT SEGFHPNRDV 300 SIPEVYLPVG KLGPASLGQH PNSRTTLAFF AGGVHGEIRK ILLKHWKDKD NEVLVHEYLP 360 KGQDYTKLMG QSKFCLCPSG HEVASPRVVE AIHAGCVPVI ICDNYSLPFS DVLNWSQFSV 420 EIPVEKIPEI KSILQSISRN KYLRLHMNVL RVRRHFMINR PTKPFDMMHM ILHSIWLRRL 480 NIKLIAS* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 5.0e-65 | 148 | 437 | 308 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABP03872.1 | 0 | 91 | 484 | 74 | 465 | Exostosin-like [Medicago truncatula] |
GenBank | ABP03873.1 | 0 | 45 | 487 | 194 | 616 | Exostosin-like [Medicago truncatula] |
EMBL | CBI21065.1 | 0 | 89 | 484 | 8 | 400 | unnamed protein product [Vitis vinifera] |
EMBL | CBI25537.1 | 0 | 31 | 484 | 30 | 475 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002263848.1 | 0 | 94 | 484 | 5 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
xylogalacturonan biosynthesis | RXN-9589 | EC-2.4.2.41 | xylogalacturonan β-1,3-xylosyltransferase |