| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma13g42630.1 |
| Family | AA3 |
| Protein Properties | Length: 586 Molecular Weight: 64466 Isoelectric Point: 10.0761 |
| Chromosome | Chromosome/Scaffold: 13 Start: 42552467 End: 42559079 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 54 | 576 | 0 |
| YDYIIVGGGTAGCPLAATLSKKFKVLVLERGGVPFNNPNVSFLHNFHITLADTSPTSASQYFISTDGVLNARGRVLGGATSINAGFYTRADPRFIRKVGW DTKLVNESYPWVEKQIVHRPKFSDWQRAVRDGLLAAGVSPFNGFTYDHKYGTKVGGTIFDRFGRRHTAAELLASANPHKLTVLIHATVQKIVFDTKGKRP KATGVIFKDENGKQHEAYLGNDRQSEVIVSSGALGTPQLLLLSGIGPKAELQKLNIPVVLDNQFVGKGMADNPMNTIFVPSKRPVQQSLIETVGITNLGV YIETSSGFGQSKDSIHCHHGILSAEIGQLSTIPPKQRSREAVKAYVKSKRDIPVEAFRGGFILSKVANPWSTGELKLINTNVEDNPAVTFNYFSHPYDLK RCVEGIRLAIKVVQTEHVTNYTLCERENAEKMLNLSVKANINLIPKHPNDTKSVEQFCRDSVITIWHYHGGCHVGKVVNSEHKVLGVDRLRVVDGSTFSE SPGTNPQATVMMMGRYMGLKILR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 586 Download |
| MAFIGAVKFL LQHLLLLCLF NYLPFSQGKQ NWNEGYPFIR RASSLGYNGK SGGYDYIIVG 60 GGTAGCPLAA TLSKKFKVLV LERGGVPFNN PNVSFLHNFH ITLADTSPTS ASQYFISTDG 120 VLNARGRVLG GATSINAGFY TRADPRFIRK VGWDTKLVNE SYPWVEKQIV HRPKFSDWQR 180 AVRDGLLAAG VSPFNGFTYD HKYGTKVGGT IFDRFGRRHT AAELLASANP HKLTVLIHAT 240 VQKIVFDTKG KRPKATGVIF KDENGKQHEA YLGNDRQSEV IVSSGALGTP QLLLLSGIGP 300 KAELQKLNIP VVLDNQFVGK GMADNPMNTI FVPSKRPVQQ SLIETVGITN LGVYIETSSG 360 FGQSKDSIHC HHGILSAEIG QLSTIPPKQR SREAVKAYVK SKRDIPVEAF RGGFILSKVA 420 NPWSTGELKL INTNVEDNPA VTFNYFSHPY DLKRCVEGIR LAIKVVQTEH VTNYTLCERE 480 NAEKMLNLSV KANINLIPKH PNDTKSVEQF CRDSVITIWH YHGGCHVGKV VNSEHKVLGV 540 DRLRVVDGST FSESPGTNPQ ATVMMMGRYM GLKILRDRLG KLAGI* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam05199 | GMC_oxred_C | 1.0e-27 | 422 | 567 | 151 | + GMC oxidoreductase. This domain found associated with pfam00732. | ||
| TIGR03970 | Rv0697 | 2.0e-29 | 55 | 567 | 565 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| TIGR01810 | betA | 1.0e-35 | 55 | 567 | 576 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
| COG2303 | BetA | 2.0e-51 | 54 | 578 | 578 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PLN02785 | PLN02785 | 0 | 26 | 585 | 568 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI35951.1 | 0 | 29 | 585 | 29 | 593 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002275841.1 | 0 | 29 | 585 | 20 | 584 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002327436.1 | 0 | 54 | 585 | 17 | 547 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329018.1 | 0 | 23 | 585 | 20 | 591 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527404.1 | 0 | 36 | 584 | 41 | 596 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ju2_B | 0 | 52 | 578 | 25 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 1ju2_A | 0 | 52 | 578 | 25 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdp_B | 0 | 52 | 578 | 25 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdp_A | 0 | 52 | 578 | 25 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdn_B | 0 | 52 | 578 | 25 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| cutin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
| cutin biosynthesis | RXN-9802 | EC-1.1.1 | 16-hydroxypalmitate dehydrogenase |
| suberin biosynthesis | RXN-2121 | EC-1.1.1 | 18-hydroxyoleate dehydrogenase |
