| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma13g44140.2 |
| Family | GH28 |
| Protein Properties | Length: 402 Molecular Weight: 43146.4 Isoelectric Point: 9.3209 |
| Chromosome | Chromosome/Scaffold: 13 Start: 43666296 End: 43670106 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 49 | 387 | 0 |
| KAACQSNSHISRLIIPAKRTFLLKPTTFSGPCKSNYTYIQLSGNIIAPKTKSEYSGFHTNTWLGFSFVNGLAISGKGTIDGRGSAWWQQPCVGNPLPGAT CRPPTAVTFNRCNRLQLKGYTSINPARSHMTLTSCKKGIISNIRLIAPGTSPNTDGIDISGSTDIQVLNSFIATGDDCIAISAGSSKIKITGITCGPGHG ISIGSLGTRGETDIVEDVHVENCTLTETLTGVRIKTWQGGAGYARRITFEKIRFVRANNPIIIDQFYCPHRSDCQNQTRAIKISDVTYKGIVGTSLTDKA INLSCDQNVGCSNIVLDHVYITPSVPGQKVFSYCHNAHG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 402 Download |
| MEFFFTVLII LSVITPGLSS TTTSFNVLQY GAVGNGQTND SPAFLKAWKA ACQSNSHISR 60 LIIPAKRTFL LKPTTFSGPC KSNYTYIQLS GNIIAPKTKS EYSGFHTNTW LGFSFVNGLA 120 ISGKGTIDGR GSAWWQQPCV GNPLPGATCR PPTAVTFNRC NRLQLKGYTS INPARSHMTL 180 TSCKKGIISN IRLIAPGTSP NTDGIDISGS TDIQVLNSFI ATGDDCIAIS AGSSKIKITG 240 ITCGPGHGIS IGSLGTRGET DIVEDVHVEN CTLTETLTGV RIKTWQGGAG YARRITFEKI 300 RFVRANNPII IDQFYCPHRS DCQNQTRAIK ISDVTYKGIV GTSLTDKAIN LSCDQNVGCS 360 NIVLDHVYIT PSVPGQKVFS YCHNAHGIAT HTKPSVKCLL K* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 6.0e-84 | 20 | 385 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 8.0e-87 | 21 | 369 | 351 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 6.0e-95 | 8 | 399 | 396 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 5.0e-104 | 1 | 399 | 399 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-105 | 25 | 387 | 364 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD28723.1 | 0 | 9 | 401 | 1 | 392 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| EMBL | CBI36306.1 | 0 | 2 | 401 | 96 | 495 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36306.1 | 0.0000004 | 328 | 394 | 23 | 88 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002324855.1 | 0 | 2 | 399 | 3 | 394 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515526.1 | 0 | 25 | 399 | 28 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 3e-18 | 127 | 351 | 80 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-18 | 127 | 351 | 80 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-18 | 127 | 351 | 80 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-18 | 127 | 351 | 80 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 3e-18 | 127 | 351 | 80 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
