Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma14g00930.1 |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 41912.8 Isoelectric Point: 6.9964 |
Chromosome | Chromosome/Scaffold: 14 Start: 481673 End: 483671 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 379 | 0 |
EEACAATSASKIVIPGGSYKMEAVDLKGPCMAPIEIQFDGTLQAPADPNALDGADEWLKVQHVNFFTLSGKGVFDGQGATAWKQNDCGTNKNCKKRSKNF GFNFLNNSMVRDITSKDSKNFHVNVLGCNNFTFDGFHVSAPNTSINTDGIHIGRSTDVKILNTNIATGDDCVSLGDGSKKITVQNVNCGPGHGISVGSLG KYPEEEPVEQLLVKNCTLTNTDNGVRIKTWPSSPGASPITDMHFEDITMVDVMNPVIIDQEYCPWNQCSKQAPSKIKISKVTFKNIQGTSKTKEGVTLIC SKGVPCEDVELNNVALTFNGAPIVAKCANVKP |
Full Sequence |
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Protein Sequence Length: 393 Download |
MDMKLNIPAI NVLFLLLAIS STTQSVDINI KKFGGGADIT QALTKAWEEA CAATSASKIV 60 IPGGSYKMEA VDLKGPCMAP IEIQFDGTLQ APADPNALDG ADEWLKVQHV NFFTLSGKGV 120 FDGQGATAWK QNDCGTNKNC KKRSKNFGFN FLNNSMVRDI TSKDSKNFHV NVLGCNNFTF 180 DGFHVSAPNT SINTDGIHIG RSTDVKILNT NIATGDDCVS LGDGSKKITV QNVNCGPGHG 240 ISVGSLGKYP EEEPVEQLLV KNCTLTNTDN GVRIKTWPSS PGASPITDMH FEDITMVDVM 300 NPVIIDQEYC PWNQCSKQAP SKIKISKVTF KNIQGTSKTK EGVTLICSKG VPCEDVELNN 360 VALTFNGAPI VAKCANVKPI VTGKAPACTC TA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 6.0e-70 | 20 | 378 | 364 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-79 | 35 | 363 | 336 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-80 | 5 | 376 | 377 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-111 | 51 | 378 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-121 | 28 | 378 | 357 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO62938.1 | 0 | 9 | 388 | 6 | 391 | polygalactorunase PG11 precursor [Medicago sativa] |
EMBL | CAA72003.1 | 0 | 1 | 392 | 1 | 393 | polygalacturonase [Medicago sativa] |
EMBL | CAF07050.1 | 0 | 1 | 337 | 1 | 338 | polygalacturonase precursor [Medicago truncatula] |
Swiss-Prot | Q40312 | 0 | 9 | 388 | 6 | 391 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002329175.1 | 0 | 13 | 390 | 15 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-17 | 115 | 364 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 4e-16 | 193 | 388 | 153 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-16 | 193 | 388 | 153 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-16 | 193 | 388 | 153 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-16 | 193 | 388 | 153 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |