| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma14g00930.2 |
| Family | GH28 |
| Protein Properties | Length: 431 Molecular Weight: 46296.6 Isoelectric Point: 6.6537 |
| Chromosome | Chromosome/Scaffold: 14 Start: 477689 End: 483671 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 86 | 417 | 0 |
| EEACAATSASKIVIPGGSYKMEAVDLKGPCMAPIEIQFDGTLQAPADPNALDGADEWLKVQHVNFFTLSGKGVFDGQGATAWKQNDCGTNKNCKKRSKNF GFNFLNNSMVRDITSKDSKNFHVNVLGCNNFTFDGFHVSAPNTSINTDGIHIGRSTDVKILNTNIATGDDCVSLGDGSKKITVQNVNCGPGHGISVGSLG KYPEEEPVEQLLVKNCTLTNTDNGVRIKTWPSSPGASPITDMHFEDITMVDVMNPVIIDQEYCPWNQCSKQAPSKIKISKVTFKNIQGTSKTKEGVTLIC SKGVPCEDVELNNVALTFNGAPIVAKCANVKP | |||
| Full Sequence |
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| Protein Sequence Length: 431 Download |
| MFYLNQVIDK SFGFDTVVEE AQRTINSAHV EAESTKNGIG IVKLMGRYSG VSTRHSMGLL 60 MRDGAQVILP LAHTIEHEEA LTKAWEEACA ATSASKIVIP GGSYKMEAVD LKGPCMAPIE 120 IQFDGTLQAP ADPNALDGAD EWLKVQHVNF FTLSGKGVFD GQGATAWKQN DCGTNKNCKK 180 RSKNFGFNFL NNSMVRDITS KDSKNFHVNV LGCNNFTFDG FHVSAPNTSI NTDGIHIGRS 240 TDVKILNTNI ATGDDCVSLG DGSKKITVQN VNCGPGHGIS VGSLGKYPEE EPVEQLLVKN 300 CTLTNTDNGV RIKTWPSSPG ASPITDMHFE DITMVDVMNP VIIDQEYCPW NQCSKQAPSK 360 IKISKVTFKN IQGTSKTKEG VTLICSKGVP CEDVELNNVA LTFNGAPIVA KCANVKPIVT 420 GKAPACTCTA * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-68 | 79 | 416 | 343 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-77 | 79 | 401 | 330 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 2.0e-78 | 80 | 414 | 336 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-113 | 89 | 416 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-119 | 76 | 416 | 344 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO62938.1 | 0 | 79 | 426 | 40 | 391 | polygalactorunase PG11 precursor [Medicago sativa] |
| DDBJ | BAA89478.1 | 0 | 79 | 428 | 44 | 393 | polygalacturonase [Salix gilgiana] |
| EMBL | CAA72003.1 | 0 | 80 | 430 | 43 | 393 | polygalacturonase [Medicago sativa] |
| EMBL | CAF07050.1 | 0 | 80 | 375 | 41 | 338 | polygalacturonase precursor [Medicago truncatula] |
| Swiss-Prot | Q40312 | 0 | 79 | 426 | 40 | 391 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-17 | 138 | 402 | 98 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 4e-16 | 231 | 426 | 153 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 4e-16 | 231 | 426 | 153 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 4e-16 | 231 | 426 | 153 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 4e-16 | 231 | 426 | 153 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EV265204 | 187 | 79 | 265 | 0 |
| GO028264 | 243 | 188 | 430 | 0 |
| FG990977 | 225 | 79 | 303 | 0 |
| EV264807 | 215 | 78 | 292 | 0 |
| EV265204 | 21 | 264 | 284 | 0.026 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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