Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma14g03710.1 |
Family | GH28 |
Protein Properties | Length: 447 Molecular Weight: 48554 Isoelectric Point: 6.1249 |
Chromosome | Chromosome/Scaffold: 14 Start: 2393648 End: 2399260 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 76 | 420 | 0 |
GGTLLYVPPGVYLTEPFNLTSHMTLYLAAGAVIMATQDSLNWPLIAPLPSYGRGRERPGGRYMSFIHGDGVQDVVITGENGTIDGQGDAWWNKWRQGTLQ FTRPNLVEFVNSRDIIISNVIFKNSPFWNIHPVYCSNVVVRYVTILAPRDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSSDIT IRRITGSSPFAGIAIGSETSGGVENVLAEHINLYNMGIGIHIKTNTGRGGFIKNITMSHVYMEEARKGIRISGDVGDHPDDKFDANALPLVKGVTIKNVW GMKVLQAGLIQGLRNSPFTDICLYDINLHGVTGPRTPPWKCSDVS |
Full Sequence |
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Protein Sequence Length: 447 Download |
MLLGFSTLAL LVCFSCCWLL VLGEGETASC SNIVALGHRT DNISITEFGG VGDGRTLNTK 60 AFREAIYRVQ HLPREGGTLL YVPPGVYLTE PFNLTSHMTL YLAAGAVIMA TQDSLNWPLI 120 APLPSYGRGR ERPGGRYMSF IHGDGVQDVV ITGENGTIDG QGDAWWNKWR QGTLQFTRPN 180 LVEFVNSRDI IISNVIFKNS PFWNIHPVYC SNVVVRYVTI LAPRDSPNTD GIDPDSSSNV 240 CIEDSYISTG DDLVAVKSGW DEYGIAYGRP SSDITIRRIT GSSPFAGIAI GSETSGGVEN 300 VLAEHINLYN MGIGIHIKTN TGRGGFIKNI TMSHVYMEEA RKGIRISGDV GDHPDDKFDA 360 NALPLVKGVT IKNVWGMKVL QAGLIQGLRN SPFTDICLYD INLHGVTGPR TPPWKCSDVS 420 GFAHQVSPWP CSELSSNQQG SCANYS* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02188 | PLN02188 | 7.0e-27 | 3 | 431 | 450 | + polygalacturonase/glycoside hydrolase family protein |
PLN03003 | PLN03003 | 3.0e-27 | 40 | 441 | 417 | + Probable polygalacturonase At3g15720 |
PLN02218 | PLN02218 | 1.0e-28 | 43 | 405 | 384 | + polygalacturonase ADPG |
pfam00295 | Glyco_hydro_28 | 2.0e-33 | 140 | 419 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
COG5434 | PGU1 | 4.0e-57 | 44 | 354 | 333 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 11 | 436 | 8 | 433 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 10 | 445 | 8 | 446 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 11 | 436 | 8 | 433 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 39 | 445 | 4 | 411 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 13 | 445 | 12 | 445 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2.8026e-45 | 43 | 405 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2.8026e-45 | 43 | 405 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2.8026e-45 | 43 | 405 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2.8026e-45 | 43 | 405 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-17 | 86 | 374 | 51 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |