Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma14g03710.2 |
Family | GH28 |
Protein Properties | Length: 336 Molecular Weight: 36636.2 Isoelectric Point: 6.0885 |
Chromosome | Chromosome/Scaffold: 14 Start: 2396270 End: 2399260 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 23 | 309 | 0 |
GGRYMSFIHGDGVQDVVITGENGTIDGQGDAWWNKWRQGTLQFTRPNLVEFVNSRDIIISNVIFKNSPFWNIHPVYCSNVVVRYVTILAPRDSPNTDGID PDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSSDITIRRITGSSPFAGIAIGSETSGGVENVLAEHINLYNMGIGIHIKTNTGRGGFIKNITMS HVYMEEARKGIRISGDVGDHPDDKFDANALPLVKGVTIKNVWGMKVLQAGLIQGLRNSPFTDICLYDINLHGVTGPRTPPWKCSDVS |
Full Sequence |
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Protein Sequence Length: 336 Download |
MDSLNWPLIA PLPSYGRGRE RPGGRYMSFI HGDGVQDVVI TGENGTIDGQ GDAWWNKWRQ 60 GTLQFTRPNL VEFVNSRDII ISNVIFKNSP FWNIHPVYCS NVVVRYVTIL APRDSPNTDG 120 IDPDSSSNVC IEDSYISTGD DLVAVKSGWD EYGIAYGRPS SDITIRRITG SSPFAGIAIG 180 SETSGGVENV LAEHINLYNM GIGIHIKTNT GRGGFIKNIT MSHVYMEEAR KGIRISGDVG 240 DHPDDKFDAN ALPLVKGVTI KNVWGMKVLQ AGLIQGLRNS PFTDICLYDI NLHGVTGPRT 300 PPWKCSDVSG FAHQVSPWPC SELSSNQQGS CANYS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-21 | 35 | 320 | 301 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 1.0e-24 | 33 | 294 | 274 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-25 | 35 | 330 | 306 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-32 | 29 | 308 | 286 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 9.0e-40 | 30 | 243 | 222 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 2 | 325 | 111 | 433 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 2 | 334 | 113 | 446 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 2 | 325 | 111 | 433 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 2 | 334 | 78 | 411 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 2 | 334 | 112 | 445 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-34 | 61 | 294 | 183 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-34 | 61 | 294 | 183 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-34 | 61 | 294 | 183 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-34 | 61 | 294 | 183 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000002 | 45 | 263 | 117 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO801770 | 292 | 45 | 336 | 0 |
DW115456 | 304 | 1 | 304 | 0 |
DV440491 | 311 | 26 | 334 | 0 |
DR929230 | 299 | 36 | 333 | 0 |
HO782444 | 224 | 110 | 333 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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