Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma14g04850.1 |
Family | GH28 |
Protein Properties | Length: 403 Molecular Weight: 42954.3 Isoelectric Point: 6.9015 |
Chromosome | Chromosome/Scaffold: 14 Start: 3341532 End: 3343538 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 59 | 389 | 0 |
CAMKNGAATLKVPPGKTFMLKPLQFSGPCSFSSVHFQLEGDVVAPKSTEAWKGQDSSKWIDFSNVDGLIIDGGGQIDGSGSVWWNSCKVKSCSRPTALSI QNCNNLQLTGTRHLNSARNHISINNSNHTHIFNVTITAPQDSPNTDGIDVSQSSYILIQRSTIATGDDCIAMKSGTSYVNITGITCGPGHGISVGSLGKK GTCQTVEHVHVNNCNFKGADNGMRIKTWPGGCGYARNIKFEHILLTNTKNPIIIDQDYENVQNEDKKQTSEVQISGVTYRCVNGTSNSETAIILNCGAGA GCTDIFMDVVNITSTSSGSNVHASCNNAHGV |
Full Sequence |
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Protein Sequence Length: 403 Download |
MEVLIAIFFV LYLVSHCSCS RIREAAINLY TFNVMDYGAI GDGLTDDSQA FLKAWSMVCA 60 MKNGAATLKV PPGKTFMLKP LQFSGPCSFS SVHFQLEGDV VAPKSTEAWK GQDSSKWIDF 120 SNVDGLIIDG GGQIDGSGSV WWNSCKVKSC SRPTALSIQN CNNLQLTGTR HLNSARNHIS 180 INNSNHTHIF NVTITAPQDS PNTDGIDVSQ SSYILIQRST IATGDDCIAM KSGTSYVNIT 240 GITCGPGHGI SVGSLGKKGT CQTVEHVHVN NCNFKGADNG MRIKTWPGGC GYARNIKFEH 300 ILLTNTKNPI IIDQDYENVQ NEDKKQTSEV QISGVTYRCV NGTSNSETAI ILNCGAGAGC 360 TDIFMDVVNI TSTSSGSNVH ASCNNAHGVA ASTSPPVSCL SQ* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02188 | PLN02188 | 8.0e-76 | 3 | 399 | 404 | + polygalacturonase/glycoside hydrolase family protein |
PLN02218 | PLN02218 | 1.0e-81 | 31 | 396 | 373 | + polygalacturonase ADPG |
PLN02793 | PLN02793 | 1.0e-83 | 32 | 401 | 375 | + Probable polygalacturonase |
PLN03010 | PLN03010 | 7.0e-98 | 27 | 393 | 367 | + polygalacturonase |
PLN03003 | PLN03003 | 3.0e-100 | 32 | 401 | 374 | + Probable polygalacturonase At3g15720 |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 402 | 1 | 398 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 1 | 400 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABO81149.1 | 0 | 35 | 402 | 1 | 370 | Glycoside hydrolase, family 28 [Medicago truncatula] |
EMBL | CBI36307.1 | 0 | 1 | 400 | 1 | 402 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 32 | 401 | 27 | 395 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 5e-26 | 44 | 358 | 5 | 308 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-26 | 44 | 358 | 5 | 308 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-26 | 44 | 358 | 5 | 308 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 5e-26 | 44 | 358 | 5 | 308 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 5e-26 | 44 | 358 | 5 | 308 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |