| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma14g23621.1 |
| Family | GH28 |
| Protein Properties | Length: 227 Molecular Weight: 25301.7 Isoelectric Point: 9.7529 |
| Chromosome | Chromosome/Scaffold: 14 Start: 28042823 End: 28044009 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 132 | 222 | 4.3e-30 |
| DGSKEVTILNVTCEPRHGISVGSLGKYSNEESVEDLTIKNCTLKNTNNGLRIKTWPSTPITSLVPNLHFEDIIMINVNNPIIIGQEYCPWN | |||
| Full Sequence |
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| Protein Sequence Length: 227 Download |
| MKMVFPHSMV TIALVLMLAS YVKAHVGLFD IRKYGAIPNG DTTMDLQNAW RDACVSMTPS 60 KVVVPSGKYK LRQIDFMGLI KLILRIRFGY INFLTLFGNG TFHGQGKMAW KQNNCAKNKN 120 CKKLAMKINS SDGSKEVTIL NVTCEPRHGI SVGSLGKYSN EESVEDLTIK NCTLKNTNNG 180 LRIKTWPSTP ITSLVPNLHF EDIIMINVNN PIIIGQEYCP WNQCSI* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 0.003 | 54 | 176 | 145 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-11 | 23 | 110 | 110 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 6.0e-14 | 134 | 219 | 86 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 7.0e-23 | 128 | 224 | 97 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-25 | 132 | 224 | 93 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABN08387.1 | 0 | 9 | 214 | 5 | 277 | Pectolytic enzyme, Pectin lyase fold [Medicago truncatula] |
| EMBL | CAA72003.1 | 2e-39 | 114 | 225 | 212 | 317 | polygalacturonase [Medicago sativa] |
| EMBL | CAN65674.1 | 1e-39 | 48 | 224 | 671 | 904 | hypothetical protein [Vitis vinifera] |
| EMBL | CAN65674.1 | 1e-26 | 128 | 226 | 1084 | 1181 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI22049.1 | 0 | 28 | 226 | 27 | 259 | unnamed protein product [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 0.000006 | 126 | 218 | 179 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000006 | 126 | 218 | 179 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000006 | 126 | 218 | 179 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.000006 | 126 | 218 | 179 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 0.000006 | 126 | 218 | 179 | 266 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Signal Peptide | |||||
|---|---|---|---|---|---|
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| Cleavage Site | |||||
| 24 | |||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
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| Hit | Length | Start | End | EValue |
| CN496790 | 99 | 128 | 226 | 9e-30 |
| CO417950 | 99 | 128 | 226 | 9e-30 |
| CN491697 | 99 | 128 | 226 | 1e-29 |
| GO513613 | 99 | 128 | 226 | 1e-29 |
| GO028956 | 94 | 132 | 225 | 2e-29 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Citrus sinensis | orange1.1g047946m | ||||
| Malus domestica | MDP0000284808 | ||||
| Populus trichocarpa | Potri.012G013600.1 | ||||
| Prunus persica | ppa012438m | ppa026186m | |||
| Vitis vinifera | GSVIVT01020328001 | ||||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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