Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma14g24151.1 |
Family | GH28 |
Protein Properties | Length: 244 Molecular Weight: 26900.7 Isoelectric Point: 6.4018 |
Chromosome | Chromosome/Scaffold: 14 Start: 28817618 End: 28819828 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 4 | 209 | 0 |
DSACQSESAVNVIIVPQDFSFLVQSTIFTGPCQGVLELKVDGTLMPPDGPESWPKNNSRHQWLVFYRINGMSLEGSSLIDGRGEKWWDLPCKPHKGPHGT TLPGACDSPIAIRFFMSSNLTVQGLGIKNSPWFHFKFDGCKNVHIESIYITTPKLSPNTDGIHIENTNDVKIYSSVISNGDDCVSIGSGCNDADIKNITC GPGHGI |
Full Sequence |
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Protein Sequence Length: 244 Download |
MAWDSACQSE SAVNVIIVPQ DFSFLVQSTI FTGPCQGVLE LKVDGTLMPP DGPESWPKNN 60 SRHQWLVFYR INGMSLEGSS LIDGRGEKWW DLPCKPHKGP HGTTLPGACD SPIAIRFFMS 120 SNLTVQGLGI KNSPWFHFKF DGCKNVHIES IYITTPKLSP NTDGIHIENT NDVKIYSSVI 180 SNGDDCVSIG SGCNDADIKN ITCGPGHGIR QPIIICFQEK LYSPHLLHQK ALMADMYQWC 240 CQT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-37 | 2 | 209 | 213 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 1.0e-40 | 2 | 209 | 209 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-47 | 2 | 209 | 210 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-47 | 7 | 209 | 203 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-48 | 2 | 209 | 209 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 2 | 209 | 111 | 317 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 1 | 209 | 91 | 297 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002320271.1 | 0 | 1 | 209 | 64 | 271 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 1 | 209 | 96 | 303 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002515219.1 | 0 | 1 | 209 | 163 | 370 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.0000002 | 78 | 209 | 115 | 253 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000001 | 74 | 209 | 72 | 199 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000001 | 74 | 209 | 72 | 199 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000001 | 74 | 209 | 72 | 199 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000001 | 74 | 209 | 72 | 199 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY170913 | 208 | 1 | 208 | 0 |
DY668959 | 188 | 1 | 188 | 0 |
DV135481 | 208 | 2 | 209 | 0 |
EE107085 | 208 | 2 | 209 | 0 |
CO125694 | 208 | 2 | 209 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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