| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma14g37030.1 |
| Family | GH28 |
| Protein Properties | Length: 387 Molecular Weight: 42020.4 Isoelectric Point: 9.516 |
| Chromosome | Chromosome/Scaffold: 14 Start: 46332434 End: 46334054 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 43 | 376 | 0 |
| RDACVSTTPSKVVIPSNKYKLRQIDFMGPCKAPIEILVNGIIKAPKNPFDVSGQNQWVRFGYINFLTLSGNGTFHGRGKMAWKQNNCSTNKNCKKLAMNF GFGFVNNSVIHDITSKDSKYFHVNVFGCKNISFTNFRVSSPAYSPNTDGIHIGKSTQVKITNSKIDTGDDCISLGDGSKEVTILNVTCGPGHGISVGSLG KYSNEDSVEDVIVKNCTLKNTNNGLRIKTWPGTAIISLASDLHFEDITMINVSNPIIIDQEYCPWNQCSKQSPSKIKISKVTFKNIRGTSATQEGITLVC SSGIPCETVELSDINLRFNGTTLVTAKCANVKPK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 387 Download |
| MATLALLLLL ASYVKAQASL FDIRKYGVVP NGDITMALQK AWRDACVSTT PSKVVIPSNK 60 YKLRQIDFMG PCKAPIEILV NGIIKAPKNP FDVSGQNQWV RFGYINFLTL SGNGTFHGRG 120 KMAWKQNNCS TNKNCKKLAM NFGFGFVNNS VIHDITSKDS KYFHVNVFGC KNISFTNFRV 180 SSPAYSPNTD GIHIGKSTQV KITNSKIDTG DDCISLGDGS KEVTILNVTC GPGHGISVGS 240 LGKYSNEDSV EDVIVKNCTL KNTNNGLRIK TWPGTAIISL ASDLHFEDIT MINVSNPIII 300 DQEYCPWNQC SKQSPSKIKI SKVTFKNIRG TSATQEGITL VCSSGIPCET VELSDINLRF 360 NGTTLVTAKC ANVKPKIGRK APICAT* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-69 | 33 | 384 | 357 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 2.0e-81 | 16 | 372 | 361 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-85 | 20 | 358 | 346 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-98 | 46 | 374 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 6.0e-116 | 15 | 382 | 372 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO62938.1 | 0 | 2 | 384 | 6 | 391 | polygalactorunase PG11 precursor [Medicago sativa] |
| DDBJ | BAA89476.1 | 0 | 11 | 377 | 20 | 384 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89477.1 | 0 | 11 | 377 | 20 | 384 | polygalacturonase [Salix gilgiana] |
| EMBL | CAA72003.1 | 0 | 1 | 386 | 7 | 391 | polygalacturonase [Medicago sativa] |
| Swiss-Prot | Q40312 | 0 | 2 | 384 | 6 | 391 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 0.000000000000002 | 95 | 373 | 54 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000002 | 95 | 373 | 54 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000000002 | 95 | 373 | 54 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000000002 | 95 | 373 | 54 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 0.000000000000002 | 95 | 373 | 54 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
