| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma15g01166.1 |
| Family | GH28 |
| Protein Properties | Length: 426 Molecular Weight: 45760.6 Isoelectric Point: 9.3015 |
| Chromosome | Chromosome/Scaffold: 15 Start: 704863 End: 709318 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 411 | 0 |
| KAACQSKSHIARLIIPAKRTFLLKPTTFSGPCKSNYTYIQLSGNIVAPKTKSEYSGFHTNTWLGFSFVNGLAISGKGTIDGRGSAWWQQPCVGNPQPGAT CRPPTAVTFNRCNRLQLKGYTSINPARSHVTLTSCNKGIISNIRLIAPGTSPNTDGIDISGSTGIQVLNSFIATGDDCIAISAGSSKIKITGITCGPGHG ISIGSLGTRGDTDIVEDVHVENCTLTETLTGVRIKTWQGGAGYARRITFENIRFVRANSPIIIDQFYCPHRSDCQNQTRAIKISDVTYKGIVGTSLTDKA INLSCDQNVGCSNIVLDHVYITPAVPGQKVFSYCHNAHG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 426 Download |
| MLYNINVEGV NLLMLLKSTA KFDIMEFFFI VLMILSVLTP GLSSTIITFN VLQYGAVGNG 60 QTNDSPAFLK AWKAACQSKS HIARLIIPAK RTFLLKPTTF SGPCKSNYTY IQLSGNIVAP 120 KTKSEYSGFH TNTWLGFSFV NGLAISGKGT IDGRGSAWWQ QPCVGNPQPG ATCRPPTAVT 180 FNRCNRLQLK GYTSINPARS HVTLTSCNKG IISNIRLIAP GTSPNTDGID ISGSTGIQVL 240 NSFIATGDDC IAISAGSSKI KITGITCGPG HGISIGSLGT RGDTDIVEDV HVENCTLTET 300 LTGVRIKTWQ GGAGYARRIT FENIRFVRAN SPIIIDQFYC PHRSDCQNQT RAIKISDVTY 360 KGIVGTSLTD KAINLSCDQN VGCSNIVLDH VYITPAVPGQ KVFSYCHNAH GIATHTKPSV 420 KCLLK* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-85 | 27 | 409 | 393 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 8.0e-87 | 45 | 393 | 351 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 2.0e-94 | 49 | 423 | 379 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 5.0e-105 | 49 | 423 | 375 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 6.0e-108 | 49 | 411 | 364 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD28723.1 | 0 | 33 | 425 | 1 | 392 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| EMBL | CAN62658.1 | 0 | 21 | 425 | 22 | 435 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI36306.1 | 0 | 22 | 425 | 92 | 495 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36306.1 | 0.0000001 | 352 | 418 | 23 | 88 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI36307.1 | 0 | 25 | 423 | 1 | 402 | unnamed protein product [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 5e-21 | 151 | 375 | 80 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 5e-21 | 151 | 375 | 80 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 5e-21 | 151 | 375 | 80 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 5e-21 | 151 | 375 | 80 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 5e-21 | 151 | 375 | 80 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
