| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma15g01250.12 |
| Family | GH28 |
| Protein Properties | Length: 358 Molecular Weight: 39574.2 Isoelectric Point: 8.0993 |
| Chromosome | Chromosome/Scaffold: 15 Start: 754568 End: 759418 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 9 | 309 | 0 |
| HVEISGTIVAPQDPVVWHGLNQRKWLYFHGVNHLTVDGGGRINGMGQEWWARSCKINSTNPCHPAPTAMTFHRCKDLKVRNLMLINSQRMHLSFTNCMRI VASHLKVLAPAFSPNTDGIHISATKGVEVRDSVIRTGDDCISIVRNSSRVWIRNISCGPGHGISIGSLGKSKKWEKVQNVIVDGVYLYNTDNGVRIKTWQ GGSGFASKITFQHILMENVSNPIIVDQYYCDSRNPCKNETSAVRVENISFIDIQGTSATEEAIKFSCSDAFPCEGLYLENIFLASCFGGNTSSFCWQAHG S | |||
| Full Sequence |
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| Protein Sequence Length: 358 Download |
| MLPELNLPHV EISGTIVAPQ DPVVWHGLNQ RKWLYFHGVN HLTVDGGGRI NGMGQEWWAR 60 SCKINSTNPC HPAPTAMTFH RCKDLKVRNL MLINSQRMHL SFTNCMRIVA SHLKVLAPAF 120 SPNTDGIHIS ATKGVEVRDS VIRTGDDCIS IVRNSSRVWI RNISCGPGHG ISIGSLGKSK 180 KWEKVQNVIV DGVYLYNTDN GVRIKTWQGG SGFASKITFQ HILMENVSNP IIVDQYYCDS 240 RNPCKNETSA VRVENISFID IQGTSATEEA IKFSCSDAFP CEGLYLENIF LASCFGGNTS 300 SFCWQAHGSA RGFLHPSTCL SSSDDRIRQN VGMVGIKEAM EDEQAPTACI YRLLVRI* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-74 | 33 | 319 | 291 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 8.0e-76 | 11 | 321 | 312 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-94 | 10 | 303 | 294 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 1.0e-99 | 3 | 298 | 302 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 0 | 10 | 331 | 322 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD28401.1 | 0 | 10 | 331 | 119 | 440 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ABM67700.1 | 0 | 10 | 329 | 115 | 434 | polygalacturonase [Citrus sinensis] |
| EMBL | CBI36284.1 | 0 | 10 | 329 | 111 | 430 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002299601.1 | 0 | 10 | 331 | 118 | 439 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517603.1 | 0 | 12 | 331 | 97 | 416 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 2e-24 | 43 | 305 | 118 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 1e-17 | 13 | 268 | 41 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 1e-17 | 13 | 268 | 41 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 1e-17 | 13 | 268 | 41 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 1e-17 | 13 | 268 | 41 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CO979919 | 253 | 81 | 333 | 0 |
| BE821780 | 201 | 133 | 333 | 0 |
| FD498523 | 253 | 64 | 316 | 0 |
| EY133898 | 234 | 53 | 286 | 0 |
| DV145325 | 244 | 88 | 331 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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