Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma15g01250.6 |
Family | GH28 |
Protein Properties | Length: 458 Molecular Weight: 50579 Isoelectric Point: 8.7497 |
Chromosome | Chromosome/Scaffold: 15 Start: 751757 End: 759418 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 77 | 410 | 0 |
ACSLSGFISVVFPYGKTFLVHPVDIGGPCRSKITLRISGTIVAPQDPVVWHGLNQRKWLYFHGVNHLTVDGGGRINGMGQEWWARSCKINSTNPCHPAPT AMTFHRCKDLKVRNLMLINSQRMHLSFTNCMRIVASHLKVLAPAFSPNTDGIHISATKGVEVRDSVIRTGDDCISIVRNSSRVWIRNISCGPGHGISIGS LGKSKKWEKVQNVIVDGVYLYNTDNGVRIKTWQGGSGFASKITFQHILMENVSNPIIVDQYYCDSRNPCKNETSAVRVENISFIDIQGTSATEEAIKFSC SDAFPCEGLYLENIFLASCFGGNTSSFCWQAHGS |
Full Sequence |
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Protein Sequence Length: 458 Download |
MKSLRYCSTS TFIIIFIHIN ILVTHAEGVD PVIQLPRSGL KRTRTRSKWV LSVGDYGAKG 60 DGLHNDTEAF LEAWKIACSL SGFISVVFPY GKTFLVHPVD IGGPCRSKIT LRISGTIVAP 120 QDPVVWHGLN QRKWLYFHGV NHLTVDGGGR INGMGQEWWA RSCKINSTNP CHPAPTAMTF 180 HRCKDLKVRN LMLINSQRMH LSFTNCMRIV ASHLKVLAPA FSPNTDGIHI SATKGVEVRD 240 SVIRTGDDCI SIVRNSSRVW IRNISCGPGH GISIGSLGKS KKWEKVQNVI VDGVYLYNTD 300 NGVRIKTWQG GSGFASKITF QHILMENVSN PIIVDQYYCD SRNPCKNETS AVRVENISFI 360 DIQGTSATEE AIKFSCSDAF PCEGLYLENI FLASCFGGNT SSFCWQAHGS ARGFLHPSTC 420 LSSSDDRIRQ NVGMVGIKEA MEDEQAPTAC IYRLLSR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-90 | 29 | 420 | 396 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 5.0e-95 | 50 | 422 | 374 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-97 | 78 | 404 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-124 | 42 | 399 | 364 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 0 | 1 | 432 | 434 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28401.1 | 0 | 24 | 432 | 30 | 440 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABM67700.1 | 0 | 1 | 430 | 1 | 434 | polygalacturonase [Citrus sinensis] |
EMBL | CBI36284.1 | 0 | 1 | 430 | 7 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002299601.1 | 0 | 1 | 432 | 1 | 439 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 30 | 432 | 13 | 416 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-24 | 144 | 406 | 118 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 4e-17 | 114 | 369 | 41 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-17 | 114 | 369 | 41 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-17 | 114 | 369 | 41 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-17 | 114 | 369 | 41 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |