| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma15g01250.7 |
| Family | GH28 |
| Protein Properties | Length: 415 Molecular Weight: 45896.4 Isoelectric Point: 8.5864 |
| Chromosome | Chromosome/Scaffold: 15 Start: 754568 End: 759418 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 52 | 366 | 0 |
| SVGDYGAKGDGLHNDTEISGTIVAPQDPVVWHGLNQRKWLYFHGVNHLTVDGGGRINGMGQEWWARSCKINSTNPCHPAPTAMTFHRCKDLKVRNLMLIN SQRMHLSFTNCMRIVASHLKVLAPAFSPNTDGIHISATKGVEVRDSVIRTGDDCISIVRNSSRVWIRNISCGPGHGISIGSLGKSKKWEKVQNVIVDGVY LYNTDNGVRIKTWQGGSGFASKITFQHILMENVSNPIIVDQYYCDSRNPCKNETSAVRVENISFIDIQGTSATEEAIKFSCSDAFPCEGLYLENIFLASC FGGNTSSFCWQAHGS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 415 Download |
| MKSLRYCSTS TFIIIFIHIN ILVTHAEGVD PVIQLPRSGL KRTRTRSKWV LSVGDYGAKG 60 DGLHNDTEIS GTIVAPQDPV VWHGLNQRKW LYFHGVNHLT VDGGGRINGM GQEWWARSCK 120 INSTNPCHPA PTAMTFHRCK DLKVRNLMLI NSQRMHLSFT NCMRIVASHL KVLAPAFSPN 180 TDGIHISATK GVEVRDSVIR TGDDCISIVR NSSRVWIRNI SCGPGHGISI GSLGKSKKWE 240 KVQNVIVDGV YLYNTDNGVR IKTWQGGSGF ASKITFQHIL MENVSNPIIV DQYYCDSRNP 300 CKNETSAVRV ENISFIDIQG TSATEEAIKF SCSDAFPCEG LYLENIFLAS CFGGNTSSFC 360 WQAHGSARGF LHPSTCLSSS DDRIRQNVGM VGIKEAMEDE QAPTACIYRL LVRI* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-73 | 90 | 376 | 291 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 1.0e-74 | 68 | 378 | 312 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-92 | 69 | 360 | 292 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-99 | 42 | 355 | 364 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 0 | 1 | 388 | 434 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD28401.1 | 0 | 24 | 388 | 30 | 440 | Glycoside hydrolase, family 28 [Medicago truncatula] |
| GenBank | ABM67700.1 | 0 | 1 | 386 | 1 | 434 | polygalacturonase [Citrus sinensis] |
| EMBL | CBI36284.1 | 0 | 1 | 386 | 7 | 430 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002299601.1 | 0 | 1 | 388 | 1 | 439 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517603.1 | 0 | 30 | 388 | 13 | 416 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 4e-24 | 100 | 362 | 118 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 3e-17 | 70 | 325 | 41 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 3e-17 | 70 | 325 | 41 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 3e-17 | 70 | 325 | 41 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 3e-17 | 70 | 325 | 41 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
