y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma15g13360.1 |
Family | GH28 |
Protein Properties | Length: 409 Molecular Weight: 43851.9 Isoelectric Point: 8.1873 |
Chromosome | Chromosome/Scaffold: 15 Start: 9969146 End: 9975296 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 64 | 394 | 0 |
WNKACSSNKPAGIHVPQGRFLIARAVTFHGQCANRAISITIRGTLVAPSQYTFVGNSLYWLTFDQVSGVSIHGGVLDARGSFLWDCKYKATPNCPIGAAT LGFTNSEHIVITGLTSLNSQLVHILINACHNVKMHGVKLMADGNSPNTDGIHVKFSTDVTILAPRIRTGDDCISVGPGCRNLWVEDVACGPGHGISIGSL GWDLDEPGVKNVTVRKATFSKTQNGFRIKSWGRPSSGFVEDVHFEHATMSDVQNPIIIDQHYCPFRNGCPSQASGVKISDISYKDIHGTSATQVAVKFDC SSEQPCERITLEDIRFTYKINKAPQALCNHA |
Full Sequence |
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Protein Sequence Length: 409 Download |
MPNPTTTTKK PSPLSLLALH TLHFLVLCTW FSTSSAKATS YNVVDFGAKP DGATDATAAF 60 LSAWNKACSS NKPAGIHVPQ GRFLIARAVT FHGQCANRAI SITIRGTLVA PSQYTFVGNS 120 LYWLTFDQVS GVSIHGGVLD ARGSFLWDCK YKATPNCPIG AATLGFTNSE HIVITGLTSL 180 NSQLVHILIN ACHNVKMHGV KLMADGNSPN TDGIHVKFST DVTILAPRIR TGDDCISVGP 240 GCRNLWVEDV ACGPGHGISI GSLGWDLDEP GVKNVTVRKA TFSKTQNGFR IKSWGRPSSG 300 FVEDVHFEHA TMSDVQNPII IDQHYCPFRN GCPSQASGVK ISDISYKDIH GTSATQVAVK 360 FDCSSEQPCE RITLEDIRFT YKINKAPQAL CNHAGGTTLG IVQPVSCF* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 6.0e-84 | 68 | 394 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-85 | 33 | 404 | 377 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-87 | 43 | 408 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 5.0e-93 | 39 | 407 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-136 | 29 | 408 | 380 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC72324.1 | 0 | 20 | 408 | 5 | 393 | endo-polygalacturonase [Prunus persica] |
DDBJ | BAC22689.1 | 0 | 10 | 408 | 3 | 398 | polygalacturonase [Pyrus communis] |
DDBJ | BAF42034.1 | 0 | 10 | 408 | 3 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 10 | 408 | 3 | 398 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002529090.1 | 0 | 10 | 408 | 5 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 9e-20 | 42 | 397 | 22 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1czf_B | 6e-19 | 68 | 380 | 45 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 6e-19 | 68 | 380 | 45 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 2e-16 | 135 | 359 | 76 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-16 | 135 | 359 | 76 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |