Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma15g14540.1 |
Family | GH28 |
Protein Properties | Length: 480 Molecular Weight: 52182.8 Isoelectric Point: 4.4823 |
Chromosome | Chromosome/Scaffold: 15 Start: 10976671 End: 10980081 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 107 | 430 | 0 |
KEACAVESGVVLVPEDYCFKITSTIFTGPCKPGLVFQVDGTLMAPDGPECWPKEDSHSQWLVFYRLDQMTLTGKGTIEGNGEQWWDLPCKPHRGPDGKTV SGPCDSPTMIRFFMSSNLVLSGVKIQNSPMFHVKFDGCQGVLIDKLSISSPKLSPNTDGIHLGNTRGVGIYNSMISNGDDCISIGPGCSDVDIEGVTCAP THGISIGSLGVHNSQACVSNLTVRNTIIKESDNGLRIKTWQGGTGSVTGLRFENIQMENVRNCIIIDQYYCMSKECLNQTSAVHVNDVTYRNIKGTYDVR TPPIHFACSDTVACTNITLSEIEL |
Full Sequence |
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Protein Sequence Length: 480 Download |
MSLIHWSLIL WITMMLFIHN LDNVEGRYHY HKGQKKNSPA PNPPAESPTP PEDPPSPPSN 60 SPSVPSDPYP NDPPGDSPSG CIFDVRSFGA VGDGSADDTD AFVAAWKEAC AVESGVVLVP 120 EDYCFKITST IFTGPCKPGL VFQVDGTLMA PDGPECWPKE DSHSQWLVFY RLDQMTLTGK 180 GTIEGNGEQW WDLPCKPHRG PDGKTVSGPC DSPTMIRFFM SSNLVLSGVK IQNSPMFHVK 240 FDGCQGVLID KLSISSPKLS PNTDGIHLGN TRGVGIYNSM ISNGDDCISI GPGCSDVDIE 300 GVTCAPTHGI SIGSLGVHNS QACVSNLTVR NTIIKESDNG LRIKTWQGGT GSVTGLRFEN 360 IQMENVRNCI IIDQYYCMSK ECLNQTSAVH VNDVTYRNIK GTYDVRTPPI HFACSDTVAC 420 TNITLSEIEL LPYEGELLDD PFCWNAYGTQ ETMTIPPLDC LREGEPDTVV ELSAYDCRS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 2.0e-73 | 83 | 461 | 386 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-78 | 82 | 457 | 379 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 4.0e-91 | 116 | 430 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-91 | 85 | 430 | 350 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-114 | 82 | 457 | 379 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK95305.1 | 0 | 8 | 476 | 9 | 470 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
RefSeq | NP_175244.1 | 0 | 8 | 476 | 9 | 470 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 17 | 477 | 17 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 477 | 1 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 477 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 5e-23 | 140 | 430 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-23 | 140 | 430 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-23 | 140 | 430 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-23 | 140 | 430 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 5e-23 | 140 | 430 | 36 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |