Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma15g16240.2 |
Family | GH28 |
Protein Properties | Length: 423 Molecular Weight: 45929.1 Isoelectric Point: 8.8651 |
Chromosome | Chromosome/Scaffold: 15 Start: 12554290 End: 12559966 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 76 | 409 | 0 |
RATCKSNVQARLLIPQGRFVVSTMFFAGPCLTPGPITIQVVGTVVATTDISEYVNGEWLMFEDLDGVKLIGGGTFDGMGKESWATTENCEADQTDTCVRN PSSIYFHKVRNGIIQNIKSVNPKGFHFFVTNCANIRLRLLKLTAPATSPNTDGIHISNSIDVKLSKNTIETGDDCVSMIQGVNNITINKLKCGPGHGISI GSLGKYADEQEVKDIRVKNCTMVGTTNGLRIKTWPDKYPGSASAITFSDIVMENVKNPIIIDQEYDCEPANCQKKPSLVKIKDVVFSNIRGTTISPIAVD LRCSKQFPCQDVKLKNINLNLGPKPSGSRCTNIK |
Full Sequence |
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Protein Sequence Length: 423 Download |
MAATKRIGVL IMFFALAYYV DAISRTKPVA SPDIYKGRNV AKDKIAPGEK IVNVLSFGAK 60 PDGKFDCTQA FMDAWRATCK SNVQARLLIP QGRFVVSTMF FAGPCLTPGP ITIQVVGTVV 120 ATTDISEYVN GEWLMFEDLD GVKLIGGGTF DGMGKESWAT TENCEADQTD TCVRNPSSIY 180 FHKVRNGIIQ NIKSVNPKGF HFFVTNCANI RLRLLKLTAP ATSPNTDGIH ISNSIDVKLS 240 KNTIETGDDC VSMIQGVNNI TINKLKCGPG HGISIGSLGK YADEQEVKDI RVKNCTMVGT 300 TNGLRIKTWP DKYPGSASAI TFSDIVMENV KNPIIIDQEY DCEPANCQKK PSLVKIKDVV 360 FSNIRGTTIS PIAVDLRCSK QFPCQDVKLK NINLNLGPKP SGSRCTNIKP VYGGVQRPAA 420 CL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 1.0e-88 | 51 | 422 | 374 | + polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-91 | 52 | 418 | 371 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-94 | 49 | 394 | 350 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-95 | 79 | 409 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-121 | 51 | 421 | 377 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69218.1 | 0 | 3 | 416 | 2 | 421 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 51 | 394 | 489 | 833 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 3 | 421 | 2 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002334010.1 | 0 | 47 | 421 | 42 | 407 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516967.1 | 0 | 47 | 421 | 47 | 411 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-20 | 144 | 394 | 113 | 374 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 8e-18 | 182 | 408 | 110 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 8e-18 | 182 | 408 | 110 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 8e-18 | 182 | 408 | 110 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 5e-17 | 142 | 405 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |