Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma15g16251.1 |
Family | GH28 |
Protein Properties | Length: 365 Molecular Weight: 38911.6 Isoelectric Point: 5.1389 |
Chromosome | Chromosome/Scaffold: 15 Start: 12561438 End: 12564136 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 291 | 1.4013e-45 |
WEDACSHTGSSTFFVPKGTFFLGPVSFSGPCHNNGSPKIEIMGTLKAPISLNDFPTLEWVVFKNLNGFNLPGLNSKATLDAQGQESWSKAACYRVMKCHN IPTALKFLNVSNGSVRNISLLNSKAAHVSIHKCENIDFSGFNIHSPGTSPNTEGITIIGDDCVAIGPGSTNISVSFVHCGPGHGISVGILGKSSNEKDVA GVHISNCIINGTKNGVR |
Full Sequence |
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Protein Sequence Length: 365 Download |
DSTALAPEPL ADYLAPFEIP PADSAEPPSL DNSPSDGSAE YIELYSTLLE YFNLTRYGAV 60 ADGRTDSSSA FLAAWEDACS HTGSSTFFVP KGTFFLGPVS FSGPCHNNGS PKIEIMGTLK 120 APISLNDFPT LEWVVFKNLN GFNLPGLNSK ATLDAQGQES WSKAACYRVM KCHNIPTALK 180 FLNVSNGSVR NISLLNSKAA HVSIHKCENI DFSGFNIHSP GTSPNTEGIT IIGDDCVAIG 240 PGSTNISVSF VHCGPGHGIS VGILGKSSNE KDVAGVHISN CIINGTKNGV RPSQVKLEDV 300 SFENISGTYN TMHGVTLWCS SAVPSENILL ANINLNYTKQ ADMEQERFIA KGVFHDLQVV 360 NSQF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 9.0e-47 | 52 | 335 | 347 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 4.0e-50 | 41 | 339 | 362 | + polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-53 | 53 | 335 | 344 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-55 | 79 | 339 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-81 | 33 | 337 | 366 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX45476.1 | 0 | 53 | 339 | 32 | 374 | polygalacturonase [Lilium longiflorum] |
EMBL | CAN69218.1 | 0 | 52 | 340 | 56 | 400 | hypothetical protein [Vitis vinifera] |
EMBL | CAN69218.1 | 0 | 52 | 364 | 490 | 863 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22963.1 | 0 | 52 | 364 | 32 | 405 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270999.1 | 0 | 52 | 364 | 71 | 444 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.0000004 | 146 | 291 | 112 | 280 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.00001 | 151 | 317 | 78 | 261 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00001 | 151 | 317 | 78 | 261 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00001 | 151 | 317 | 78 | 261 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.00001 | 151 | 317 | 78 | 261 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DR930531 | 241 | 70 | 291 | 0 |
HO770790 | 249 | 52 | 286 | 0 |
EE107069 | 243 | 63 | 291 | 0 |
GR452825 | 277 | 52 | 308 | 0 |
GR459882 | 254 | 52 | 291 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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