| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma15g19820.1 |
| Family | GH28 |
| Protein Properties | Length: 490 Molecular Weight: 54073.2 Isoelectric Point: 9.5385 |
| Chromosome | Chromosome/Scaffold: 15 Start: 17252847 End: 17258820 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 103 | 451 | 0 |
| KGGGQLNVPPGRWLTAPFNLTSHMTLFLARDAVILAVQDEKYWPLMPALPSYGYGREHPGPRYSSLIHGQNLVDVVITGHNGTINGQGQTWWTKYRQKLL NHTRGPLVQILWSSNIVISNITLRDSPFWTLHPYDCKNVTVKKVTILAPVSHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGITYGRPSKN IVIRNLVVRSNVSAGISIGSEMSGGVSNVLVENILVWESRRAMRIKTAPGRGGYVRQITYKNLMLKNVRVGIVIKTDYNEHPGAGYDPRALPILRDISFM NIRGQGVRVPVRIQGSEQIPVRNVTFQDMKVGITYKKKHIFQCAFVQGQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 490 Download |
| MVENTGQGGG IWFQLFHPKT APFASHKTLF VFLWVATLAS VLVWQRTTIS GFLVLGGVPV 60 RTPPKLRPVV FCLTEFGGVG DGVTLNTEAF ERGVGAISKL GDKGGGQLNV PPGRWLTAPF 120 NLTSHMTLFL ARDAVILAVQ DEKYWPLMPA LPSYGYGREH PGPRYSSLIH GQNLVDVVIT 180 GHNGTINGQG QTWWTKYRQK LLNHTRGPLV QILWSSNIVI SNITLRDSPF WTLHPYDCKN 240 VTVKKVTILA PVSHAPNTDG IDPDSCEDML IEDCYISVGD DAIAIKSGWD QYGITYGRPS 300 KNIVIRNLVV RSNVSAGISI GSEMSGGVSN VLVENILVWE SRRAMRIKTA PGRGGYVRQI 360 TYKNLMLKNV RVGIVIKTDY NEHPGAGYDP RALPILRDIS FMNIRGQGVR VPVRIQGSEQ 420 IPVRNVTFQD MKVGITYKKK HIFQCAFVQG QAIGTIFPSP CDSFDRYNEQ GQLVKHAASQ 480 NVTDIDYEI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-25 | 75 | 452 | 387 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-30 | 23 | 465 | 467 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-30 | 73 | 433 | 378 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-40 | 169 | 440 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-65 | 47 | 390 | 369 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69988.1 | 0 | 21 | 489 | 25 | 509 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002277239.1 | 0 | 21 | 489 | 25 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324728.1 | 0 | 21 | 489 | 26 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002326133.1 | 0 | 21 | 489 | 26 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516244.1 | 0 | 23 | 489 | 26 | 494 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 73 | 430 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 73 | 430 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 73 | 430 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 73 | 430 | 30 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 5e-23 | 115 | 433 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778855 | 425 | 21 | 445 | 0 |
| FE707848 | 300 | 73 | 372 | 0 |
| FN769574 | 315 | 145 | 459 | 0 |
| CX102356 | 331 | 126 | 456 | 0 |
| EX656855 | 270 | 81 | 350 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
