Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma15g23310.1 |
Family | GH28 |
Protein Properties | Length: 402 Molecular Weight: 42927.3 Isoelectric Point: 8.3834 |
Chromosome | Chromosome/Scaffold: 15 Start: 22446010 End: 22449804 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 380 | 0 |
WSNACKSKESATFYVPKGNFLIKQVTFEGPCSNNIKFRIDGTIVAPSDYRSHGNSGMWIMFRNLNGFSVQGGTFDGKGDSYWRCRKSGSSCPAGARSITF SSCNDVKVSGLTSLNSQAMHIAVDHCKNILFKNVKIDAPSTSPNTDGFNVILSTGVTVSQAIISTGDDCIALSQGNTNVWIEHITCGPGHGISIGSLGAY KNEAGVHNVTVTDSIFEGTQNGVRIKSWAQPSNGYASNIVFRNLTMKNANNPIIIDQNYCPGDKSCPHQSSGVKISKVSYEHIRGTSACPQAINLDCSKS NPCEGIKLQDIDLVYGEGSTTSTCNNVG |
Full Sequence |
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Protein Sequence Length: 402 Download |
MAHYTNHLML LFLATISFFS STFSKDASSI NVLSFGAKPN GKFDSTTSFL KAWSNACKSK 60 ESATFYVPKG NFLIKQVTFE GPCSNNIKFR IDGTIVAPSD YRSHGNSGMW IMFRNLNGFS 120 VQGGTFDGKG DSYWRCRKSG SSCPAGARSI TFSSCNDVKV SGLTSLNSQA MHIAVDHCKN 180 ILFKNVKIDA PSTSPNTDGF NVILSTGVTV SQAIISTGDD CIALSQGNTN VWIEHITCGP 240 GHGISIGSLG AYKNEAGVHN VTVTDSIFEG TQNGVRIKSW AQPSNGYASN IVFRNLTMKN 300 ANNPIIIDQN YCPGDKSCPH QSSGVKISKV SYEHIRGTSA CPQAINLDCS KSNPCEGIKL 360 QDIDLVYGEG STTSTCNNVG GINSGVVIPK SCVSLHSLNE K* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 7.0e-92 | 13 | 390 | 385 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-93 | 57 | 379 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 6.0e-102 | 32 | 394 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 9.0e-108 | 30 | 392 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-148 | 12 | 394 | 384 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002275740.1 | 0 | 10 | 393 | 4 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309713.1 | 0 | 9 | 393 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331633.1 | 0 | 1 | 393 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 1 | 393 | 1 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529095.1 | 0 | 8 | 392 | 4 | 389 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 7e-19 | 114 | 338 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-19 | 114 | 338 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-19 | 114 | 338 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-19 | 114 | 338 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 7e-19 | 114 | 338 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |