| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma15g42420.2 |
| Family | GH28 |
| Protein Properties | Length: 367 Molecular Weight: 39866.5 Isoelectric Point: 7.7067 |
| Chromosome | Chromosome/Scaffold: 15 Start: 49838868 End: 49843409 |
| Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 73 | 327 | 0 |
| SVTFQIKGTLDGQGSATRQKCKNNANCEILFTTMDFDFITNGHVQNLHSIDSKGGHFIVFGCENMTFTDLTLKSPENNHNTDGIKISQTNGINITGVKIG TGDDCVAMISGTKNVRISNVVCGPGHGISVGSLGKNDGETDVEDIVVKNCTFVGTSNGLRIKTWAAPLKKNLKASKFVYEDIVMNNVQNPVVIDQQYCPL HQCDLKVCASSYNVACRNIRGSSKSDIAVIFNCSKDKPCQNITMDNINLWGYSDN | |||
| Full Sequence |
|---|
| Protein Sequence Length: 367 Download |
| MYGKYLFMLC LWPFIAEAHI KLFNVAEYGA ITDGKEDNSV SDACNWNGSA TVLIPEGTYM 60 LKSVIFKGPC NGSVTFQIKG TLDGQGSATR QKCKNNANCE ILFTTMDFDF ITNGHVQNLH 120 SIDSKGGHFI VFGCENMTFT DLTLKSPENN HNTDGIKISQ TNGINITGVK IGTGDDCVAM 180 ISGTKNVRIS NVVCGPGHGI SVGSLGKNDG ETDVEDIVVK NCTFVGTSNG LRIKTWAAPL 240 KKNLKASKFV YEDIVMNNVQ NPVVIDQQYC PLHQCDLKVC ASSYNVACRN IRGSSKSDIA 300 VIFNCSKDKP CQNITMDNIN LWGYSDNGKG RLLLRNYCFE VNGASYGKQS PPSCTPHLKP 360 VLLGLH* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-62 | 24 | 323 | 345 | + polygalacturonase ADPG | ||
| PLN02155 | PLN02155 | 8.0e-66 | 6 | 354 | 392 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 1.0e-66 | 21 | 354 | 380 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-76 | 44 | 323 | 312 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-86 | 22 | 355 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_173158.1 | 0 | 2 | 354 | 12 | 400 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_180874.1 | 0 | 1 | 358 | 1 | 406 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002273801.1 | 0 | 6 | 354 | 13 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002300425.1 | 0 | 21 | 354 | 1 | 367 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002314146.1 | 0 | 2 | 354 | 3 | 391 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 0.000000000000003 | 136 | 323 | 132 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.000000000000003 | 136 | 323 | 132 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.000000000000003 | 136 | 323 | 132 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.000000000000003 | 136 | 323 | 132 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 0.000000000000003 | 136 | 323 | 132 | 320 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
