| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma15g43080.2 |
| Family | GH28 |
| Protein Properties | Length: 440 Molecular Weight: 48509.9 Isoelectric Point: 8.9492 |
| Chromosome | Chromosome/Scaffold: 15 Start: 50606695 End: 50611648 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 94 | 426 | 0 |
| ACSTGGILVVPEEKIYHLKPITFSGPCLTNTAFRVYGTIKAWPKMSTYQNDRLHWIKFENVTNLRVDGGGTINGNGRKWWENSCKRNENLPCKPAPTAVT FYQCNNLRVTNLRFKNAQQMHIRFQKCNNVTASNLIVRAPGNSPNTDGIHVTETRNILISNSIIGTGDDCISIVSGSQNVRAIDVKCGPGHGISIGSLGA GDSKAQVSNVLVNRATFTGTTNGVRIKTWQGGSGYAKNVKFVNITMRNVTNPIIVDQNYCDQDKPCHEKDSAVKLSNIVYQNIRGTSASEVAIKFDCSKT VPCKGIYLQDVILTPEDHGGGGSSTIATCENVR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 440 Download |
| MRMSPQSVAL PFFITMFVSF GVCFGSFLED TYHLTNYQRY SMKPNNEHFG IMTRAYGSTP 60 STRSQRRINI DDYGAKASDG RDDTEAFEKA WDEACSTGGI LVVPEEKIYH LKPITFSGPC 120 LTNTAFRVYG TIKAWPKMST YQNDRLHWIK FENVTNLRVD GGGTINGNGR KWWENSCKRN 180 ENLPCKPAPT AVTFYQCNNL RVTNLRFKNA QQMHIRFQKC NNVTASNLIV RAPGNSPNTD 240 GIHVTETRNI LISNSIIGTG DDCISIVSGS QNVRAIDVKC GPGHGISIGS LGAGDSKAQV 300 SNVLVNRATF TGTTNGVRIK TWQGGSGYAK NVKFVNITMR NVTNPIIVDQ NYCDQDKPCH 360 EKDSAVKLSN IVYQNIRGTS ASEVAIKFDC SKTVPCKGIY LQDVILTPED HGGGGSSTIA 420 TCENVRYVHR GKFFPPCST* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 4.0e-99 | 64 | 426 | 368 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 4.0e-107 | 68 | 436 | 373 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-118 | 95 | 425 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 1.0e-136 | 63 | 436 | 377 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 4.0e-148 | 12 | 438 | 437 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC26512.1 | 0 | 10 | 437 | 19 | 458 | polygalacturonase precursor [Cucumis melo] |
| GenBank | ABC70314.1 | 0 | 3 | 438 | 1 | 439 | polygalacturonase precursor [Glycine max] |
| RefSeq | XP_002282759.1 | 0 | 3 | 438 | 1 | 442 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002313308.1 | 0 | 64 | 438 | 5 | 376 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517823.1 | 0 | 23 | 437 | 23 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-24 | 148 | 352 | 102 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 1e-19 | 155 | 418 | 69 | 339 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1nhc_F | 2e-18 | 162 | 425 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-18 | 162 | 425 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-18 | 162 | 425 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
