Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma16g03680.1 |
Family | GH28 |
Protein Properties | Length: 492 Molecular Weight: 54116 Isoelectric Point: 8.568 |
Chromosome | Chromosome/Scaffold: 16 Start: 3090977 End: 3096992 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 96 | 445 | 0 |
YASKGGAQLYVPAGKWLTGSFSLISHFTLYLNKDAFLLASQDIREWPVIEPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGAFWWQKFQK KKLKYTRPYLIELMFSDKIQISNLTLLNSPSWNVHPVYSSNIIIKGLTIIAPVPSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIKFGWPT KQLVIRRLTCISPESAAIALGSEMSGGIQDVRAEDITAIHTESGVRIKTAVGRGGYVKDIYVKRMTMHTMKWVFWMTGNYGSHADSHYDPNALPEINGIN YRDVVADNVTIAARLEGISNDPFTGICIANVTINMAAKAKKQPWACTDIE |
Full Sequence |
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Protein Sequence Length: 492 Download |
MSQTNTKVPF LRMKLLWKSH VRVQVIRLVC ALLLVTLLSS EVAESRKAKT ARTSFEYKAI 60 NCRAHSASLI DFGGVGDGNT SNTKAFQSAI SHLSQYASKG GAQLYVPAGK WLTGSFSLIS 120 HFTLYLNKDA FLLASQDIRE WPVIEPLPSY GRGRDAAAGR YTSLIFGTNL TDVIVTGDNG 180 TIDGQGAFWW QKFQKKKLKY TRPYLIELMF SDKIQISNLT LLNSPSWNVH PVYSSNIIIK 240 GLTIIAPVPS PNTDGINPDS CTNTRIEDCY IVSGDDCVAV KSGWDEYGIK FGWPTKQLVI 300 RRLTCISPES AAIALGSEMS GGIQDVRAED ITAIHTESGV RIKTAVGRGG YVKDIYVKRM 360 TMHTMKWVFW MTGNYGSHAD SHYDPNALPE INGINYRDVV ADNVTIAARL EGISNDPFTG 420 ICIANVTINM AAKAKKQPWA CTDIEGITSG VTPKPCNSLP DQGPEKIKAC DFPQENLPID 480 MLELQKCVYK H* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-17 | 65 | 344 | 295 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-19 | 66 | 457 | 411 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 7.0e-21 | 64 | 366 | 311 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 3.0e-24 | 171 | 456 | 300 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-58 | 67 | 362 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 43 | 489 | 40 | 485 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
GenBank | AAP33475.1 | 0 | 54 | 489 | 35 | 470 | polygalacturonase-like protein [Fragaria x ananassa] |
RefSeq | XP_002277736.1 | 0 | 43 | 489 | 28 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 37 | 489 | 14 | 465 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511903.1 | 0 | 13 | 489 | 1 | 467 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 65 | 431 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 65 | 431 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 65 | 431 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 65 | 431 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-16 | 83 | 402 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES810566 | 337 | 154 | 490 | 0 |
HO760745 | 289 | 199 | 487 | 0 |
CX665315 | 293 | 198 | 490 | 0 |
DY257045 | 327 | 110 | 436 | 0 |
CX665540 | 293 | 198 | 490 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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