| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma16g03680.2 |
| Family | GH28 |
| Protein Properties | Length: 490 Molecular Weight: 53888.8 Isoelectric Point: 8.568 |
| Chromosome | Chromosome/Scaffold: 16 Start: 3090977 End: 3096992 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 94 | 443 | 0 |
| YASKGGAQLYVPAGKWLTGSFSLISHFTLYLNKDAFLLASQDIREWPVIEPLPSYGRGRDAAAGRYTSLIFGTNLTDVIVTGDNGTIDGQGAFWWQKFQK KKLKYTRPYLIELMFSDKIQISNLTLLNSPSWNVHPVYSSNIIIKGLTIIAPVPSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIKFGWPT KQLVIRRLTCISPESAAIALGSEMSGGIQDVRAEDITAIHTESGVRIKTAVGRGGYVKDIYVKRMTMHTMKWVFWMTGNYGSHADSHYDPNALPEINGIN YRDVVADNVTIAARLEGISNDPFTGICIANVTINMAAKAKKQPWACTDIE | |||
| Full Sequence |
|---|
| Protein Sequence Length: 490 Download |
| MSQTNTKVPF LRMKLLWKSH VRVIRLVCAL LLVTLLSSEV AESRKAKTAR TSFEYKAINC 60 RAHSASLIDF GGVGDGNTSN TKAFQSAISH LSQYASKGGA QLYVPAGKWL TGSFSLISHF 120 TLYLNKDAFL LASQDIREWP VIEPLPSYGR GRDAAAGRYT SLIFGTNLTD VIVTGDNGTI 180 DGQGAFWWQK FQKKKLKYTR PYLIELMFSD KIQISNLTLL NSPSWNVHPV YSSNIIIKGL 240 TIIAPVPSPN TDGINPDSCT NTRIEDCYIV SGDDCVAVKS GWDEYGIKFG WPTKQLVIRR 300 LTCISPESAA IALGSEMSGG IQDVRAEDIT AIHTESGVRI KTAVGRGGYV KDIYVKRMTM 360 HTMKWVFWMT GNYGSHADSH YDPNALPEIN GINYRDVVAD NVTIAARLEG ISNDPFTGIC 420 IANVTINMAA KAKKQPWACT DIEGITSGVT PKPCNSLPDQ GPEKIKACDF PQENLPIDML 480 ELQKCVYKH* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 4.0e-17 | 63 | 342 | 295 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 2.0e-19 | 64 | 455 | 411 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 7.0e-21 | 62 | 364 | 311 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-24 | 169 | 454 | 300 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-58 | 65 | 360 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | A7PZL3 | 0 | 41 | 487 | 40 | 485 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
| GenBank | AAP33475.1 | 0 | 52 | 487 | 35 | 470 | polygalacturonase-like protein [Fragaria x ananassa] |
| RefSeq | XP_002277736.1 | 0 | 41 | 487 | 28 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301370.1 | 0 | 35 | 487 | 14 | 465 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002511903.1 | 0 | 13 | 487 | 1 | 467 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 63 | 429 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 63 | 429 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 63 | 429 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 63 | 429 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 3e-16 | 81 | 400 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
