y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma16g22488.1 |
Family | GH28 |
Protein Properties | Length: 481 Molecular Weight: 53957.5 Isoelectric Point: 4.9069 |
Chromosome | Chromosome/Scaffold: 16 Start: 25974090 End: 25978329 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 291 | 414 | 6.5e-34 |
DTPDFDLSLNNITIRGKGVIDGQGSVWWNNDSPTYNPTEVMLESKGRLPSTKPTLKALRFYGSDGVTVTCITIQNSQQTHLKFDSCTNVQVSGISVSSPG DSPNTDGIHLQNSQNVVIYSSTLA |
Full Sequence |
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Protein Sequence Length: 481 Download |
MHYLVVVLAL NRVSLFGLGL GLARCGKSCR LRWLNYLRPN LKIGNYTEEE EETIIKLHRH 60 LAKILKVILA KEELSLDVDL DAVASMTDGY SRSDLKVPGF LFPVTLFFEI KVTIIQYLML 120 ALILQNLCIT AVDRPIKEIL EKEKKVSTEW PGFPLGVKFD PSDVELLECL AAKCGIGNTQ 180 QHMFINEFIP TLEGDQGICY THPKNLPDIQ DQDFPGNAAW LAGESRAEEN TKYDGCDDVL 240 LCKEILDSSA ILNDPGLDST NLEDIADYAT QRARNDHESW GISILDSLEL DTPDFDLSLN 300 NITIRGKGVI DGQGSVWWNN DSPTYNPTEV MLESKGRLPS TKPTLKALRF YGSDGVTVTC 360 ITIQNSQQTH LKFDSCTNVQ VSGISVSSPG DSPNTDGIHL QNSQNVVIYS STLACEKREI 420 ELLSTLLKSN EVDPPSRDEK LRNERIYKFY QHNRNPFVDH PKYAILIWKQ PVFHQLTNIV 480 * 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03091 | PLN03091 | 6.0e-13 | 10 | 58 | 57 | + hypothetical protein; Provisional | ||
PLN02188 | PLN02188 | 2.0e-14 | 299 | 414 | 117 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 1.0e-16 | 299 | 413 | 115 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-20 | 299 | 413 | 118 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 7.0e-24 | 298 | 412 | 115 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004518 | nuclease activity |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 273 | 415 | 114 | 248 | polygalacturonase PG1 [Glycine max] |
GenBank | AAD46484.1 | 0 | 273 | 415 | 110 | 244 | polygalacturonase PG2 [Glycine max] |
GenBank | AAO24262.1 | 1.99965e-42 | 280 | 422 | 159 | 295 | putative style polygalacturonase [Turnera subulata] |
GenBank | ACU24545.1 | 0 | 273 | 415 | 114 | 248 | unknown [Glycine max] |
DDBJ | BAH56488.1 | 9.94922e-44 | 280 | 415 | 176 | 313 | polygalacturonase 1 [Prunus persica] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1msf_C | 0.00007 | 23 | 73 | 36 | 90 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 1mse_C | 0.00007 | 23 | 73 | 36 | 90 | C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices |
PDB | 1gv2_A | 0.00008 | 23 | 62 | 36 | 75 | A Chain A, Crystal Structure Of C-Myb R2r3 |
PDB | 1h8a_C | 0.0001 | 23 | 62 | 59 | 98 | C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 |
Signal Peptide | |||||
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Cleavage Site | |||||
23 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FG992538 | 97 | 208 | 304 | 0 |
FG992538 | 66 | 146 | 211 | 0 |
BI784578 | 106 | 313 | 418 | 0 |
BI784577 | 106 | 313 | 418 | 0 |
FG992538 | 22 | 124 | 145 | 1.9 |
Orthologous Group | |||||
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Species | ID | ||||
Brassica rapa | Bra014620 | ||||
Glycine max | Glyma09g26905.1 | ||||
Populus trichocarpa | Potri.001G108000.1 | ||||
Prunus persica | ppb019654m |
Sequence Alignments (This image is cropped. Click for full image.) |
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