| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma16g25710.2 |
| Family | PL1 |
| Protein Properties | Length: 360 Molecular Weight: 40514.6 Isoelectric Point: 8.675 |
| Chromosome | Chromosome/Scaffold: 16 Start: 29753500 End: 29755230 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 80 | 279 | 0 |
| WITFQRDMHIRLEKPLLISSFTTIDGRGVNVHIVDNACLMIFKATNIIIHGLRIHHCRPQAPGMVMGPNGEVIPLGQVDGDAIRLVTASKIWIDHNTLYD CQDGLLDVTRGSTNVTISNNWFREQNKVMLLGHDDGYMRDKDMMVTVVYNYFGPNCHQRMPRIRHGYAHVANNLYMGWVQYAIGGSMEPSLKSESNLFIA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 360 Download |
| MTYQVINYIL WCFVLAVVSV TMFNPKVSSA SKQSKLEGLE MNEIDQCWRL NPEWRKHRSQ 60 LAKCSVGYVG KMTNNIGKVW ITFQRDMHIR LEKPLLISSF TTIDGRGVNV HIVDNACLMI 120 FKATNIIIHG LRIHHCRPQA PGMVMGPNGE VIPLGQVDGD AIRLVTASKI WIDHNTLYDC 180 QDGLLDVTRG STNVTISNNW FREQNKVMLL GHDDGYMRDK DMMVTVVYNY FGPNCHQRMP 240 RIRHGYAHVA NNLYMGWVQY AIGGSMEPSL KSESNLFIAP TSGRKEVTWR KSNGIGDSWE 300 FHSVGDVFEN GASFMETQGG QVPKPNYNPE QSFKVVDAKC VRSLTISSGV LRCSKTSIC* 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-27 | 97 | 294 | 223 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-55 | 99 | 277 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 1.0e-66 | 86 | 280 | 206 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 73 | 359 | 34 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 41 | 359 | 19 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 41 | 359 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 41 | 359 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 13 | 287 | 6 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 42 | 351 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 42 | 351 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pcl_A | 0.000000000000002 | 77 | 277 | 61 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 3zsc_A | 0.000000000000005 | 71 | 268 | 40 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 0.00000000000001 | 102 | 343 | 82 | 314 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
