Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma16g29780.1 |
Family | GH28 |
Protein Properties | Length: 478 Molecular Weight: 52450.9 Isoelectric Point: 5.6361 |
Chromosome | Chromosome/Scaffold: 16 Start: 33465753 End: 33469045 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 86 | 430 | 0 |
GGALLVVPPGKWLTGSFNLTSHFTLFLQKEATILGSQDESEWPTLPVLPSYGRGRDAPDGRFSSLIFGTNLTDVIITGYNGTIDGQGCYWWDKFHKGELK LTRPYMIEIMFSDHIQISNLTLINSPSWFVHPIYTSDIIIQGLTILAPVDSPNTDGIDPDSCSNIRIEDCYIVSGDDCVAIKSGWDEYGIKFGMPSQHII IRRLECVSPDSAMIALGSEMSGGIQDVRAEDLTAINTQSAVRIKTAVGRGAYVRDIFIKGMNLNTMKYVFWMTGSYSSHPDNGFDPKTLPNITGINYRDV IAENVTYSARLEGIANDPFTGICISNVTIHSGKKKLQWNCTDIEG |
Full Sequence |
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Protein Sequence Length: 478 Download |
MKPCPKLSNS CVVGVIYTVL LLGLQGVRVV ECRVANGLDC FEYPAISCRK HSAVLTDFGG 60 VGDGKTSNTK AFQYAISNLS HYASDGGALL VVPPGKWLTG SFNLTSHFTL FLQKEATILG 120 SQDESEWPTL PVLPSYGRGR DAPDGRFSSL IFGTNLTDVI ITGYNGTIDG QGCYWWDKFH 180 KGELKLTRPY MIEIMFSDHI QISNLTLINS PSWFVHPIYT SDIIIQGLTI LAPVDSPNTD 240 GIDPDSCSNI RIEDCYIVSG DDCVAIKSGW DEYGIKFGMP SQHIIIRRLE CVSPDSAMIA 300 LGSEMSGGIQ DVRAEDLTAI NTQSAVRIKT AVGRGAYVRD IFIKGMNLNT MKYVFWMTGS 360 YSSHPDNGFD PKTLPNITGI NYRDVIAENV TYSARLEGIA NDPFTGICIS NVTIHSGKKK 420 LQWNCTDIEG VTSNVYPKPC ELLPLKQEKI ECPYPDDKVS IESVQLKTCS FKSVSFF* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-18 | 58 | 348 | 302 | + polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-20 | 55 | 418 | 373 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-27 | 55 | 437 | 401 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 4.0e-29 | 151 | 470 | 339 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-55 | 53 | 355 | 327 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD32865.1 | 0 | 5 | 476 | 4 | 467 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ACU17976.1 | 0 | 1 | 477 | 1 | 477 | unknown [Glycine max] |
RefSeq | XP_002327490.1 | 0 | 42 | 473 | 21 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 30 | 470 | 30 | 474 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002513653.1 | 0 | 1 | 473 | 1 | 473 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 38 | 418 | 15 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 38 | 418 | 15 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 38 | 418 | 15 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 38 | 418 | 15 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000002 | 69 | 388 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |