Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma17g03300.1 |
Family | GH28 |
Protein Properties | Length: 450 Molecular Weight: 48703.4 Isoelectric Point: 5.0564 |
Chromosome | Chromosome/Scaffold: 17 Start: 2195858 End: 2198733 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 416 | 0 |
DKGGAQLYVPPGTWLTQSFNLTSHLTLFLEKGAVILGSQDPFHWEVVDPLPSYGRGVEVPGGRYQSLVNGYMLHDVVITGNNGIIDGMGLGWWELFSSHS LNYSRPHLIELVASNRVVVSNLTFLNAPAYSIHPVYCSNVHIHNVSISAPQESPYTIGIVPDSSDHVCIEDCVIATGYDAISLKSGWDEYGIAYGRPTEN VHIRRVHLQAYSGSTIAFGSDMSGGISNILVENVHLYNSKSGIEFRTMRGRGGYMKEIIISDIEMENIYTAMAATGYCGSHPDDKFDPNALPLLDHIILQ DMIGTNITIAGSFAGLQESPFTNICLSNVTLSINSVSSIPWECSNVS |
Full Sequence |
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Protein Sequence Length: 450 Download |
MLVALLLLLA LSNEVRVNGD SDGRQCEVNP ALKPRPHTVS ILEFGAVGDG KTLNTIAFQN 60 AIFYLKSFAD KGGAQLYVPP GTWLTQSFNL TSHLTLFLEK GAVILGSQDP FHWEVVDPLP 120 SYGRGVEVPG GRYQSLVNGY MLHDVVITGN NGIIDGMGLG WWELFSSHSL NYSRPHLIEL 180 VASNRVVVSN LTFLNAPAYS IHPVYCSNVH IHNVSISAPQ ESPYTIGIVP DSSDHVCIED 240 CVIATGYDAI SLKSGWDEYG IAYGRPTENV HIRRVHLQAY SGSTIAFGSD MSGGISNILV 300 ENVHLYNSKS GIEFRTMRGR GGYMKEIIIS DIEMENIYTA MAATGYCGSH PDDKFDPNAL 360 PLLDHIILQD MIGTNITIAG SFAGLQESPF TNICLSNVTL SINSVSSIPW ECSNVSGFSD 420 SVLPKPCPDL ETLSDCLSLL SIKGKTAVM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 3.0e-20 | 30 | 427 | 422 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-22 | 152 | 415 | 271 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 6.0e-27 | 37 | 424 | 401 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 4.0e-28 | 36 | 400 | 385 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 3.0e-49 | 28 | 378 | 386 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 12 | 428 | 12 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 12 | 428 | 14 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 15 | 432 | 15 | 431 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 15 | 447 | 17 | 448 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 1 | 449 | 1 | 454 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 4e-33 | 37 | 406 | 26 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 4e-33 | 37 | 406 | 26 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 4e-33 | 37 | 406 | 26 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 4e-33 | 37 | 406 | 26 | 416 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.0000000000009 | 35 | 399 | 153 | 565 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |