| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma17g05550.1 |
| Family | GH28 |
| Protein Properties | Length: 493 Molecular Weight: 54986.1 Isoelectric Point: 8.4351 |
| Chromosome | Chromosome/Scaffold: 17 Start: 3892150 End: 3900736 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 105 | 453 | 0 |
| KKGGAQLNVPPGRWLTAPFNLTSHMTLFLAEDAVILGIDDEKYWPLMPPLPSYGYGREHPGPRYGSLIHGQHLKDVVITGHNGTINGQGQSWWKKYRQKR LNHTRGPLVQIMFSSDIVITNITLRDSPFWTIHPYDCKNITIKGVTILAPVFGAPNTDGIDPDSCEDMLIEDCYISVGDDAIAVKSGWDQYGIDYGRPSM NIMIRNLVVRSMVSAGISIGSEMSGGVSNVTVENLLIWDSRRGVRIKTAPGRGAYVRQITYRNITFENVRVGIVMKTDYNEHPDDGYDPLALPILRDISF TTVHGQGVRVPVRIHGSEEIPVRNVTFKDMSVGLTYKKKHIFQCAFVQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 493 Download |
| MMVETSTLGH FHHQRLDLRR WVPAFFTSHK TLLTLLWIAA FASVFLWQRN IVGGFLVYGG 60 IPGRPMPMLR PMAFNLTDFG GVGDGVTLNT EAFERAVSAV SKFGKKGGAQ LNVPPGRWLT 120 APFNLTSHMT LFLAEDAVIL GIDDEKYWPL MPPLPSYGYG REHPGPRYGS LIHGQHLKDV 180 VITGHNGTIN GQGQSWWKKY RQKRLNHTRG PLVQIMFSSD IVITNITLRD SPFWTIHPYD 240 CKNITIKGVT ILAPVFGAPN TDGIDPDSCE DMLIEDCYIS VGDDAIAVKS GWDQYGIDYG 300 RPSMNIMIRN LVVRSMVSAG ISIGSEMSGG VSNVTVENLL IWDSRRGVRI KTAPGRGAYV 360 RQITYRNITF ENVRVGIVMK TDYNEHPDDG YDPLALPILR DISFTTVHGQ GVRVPVRIHG 420 SEEIPVRNVT FKDMSVGLTY KKKHIFQCAF VQGRVIGTIY PAPCENLDRY NEQGQLVKHS 480 ASQNVTDIDY DF* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 6.0e-24 | 74 | 464 | 409 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 3.0e-31 | 73 | 436 | 377 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 1.0e-33 | 26 | 464 | 459 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-40 | 172 | 443 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-66 | 73 | 375 | 326 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69988.1 | 0 | 2 | 492 | 1 | 509 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002277239.1 | 0 | 2 | 492 | 1 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002324728.1 | 0 | 2 | 492 | 1 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002326133.1 | 0 | 2 | 492 | 1 | 495 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516244.1 | 0 | 1 | 492 | 1 | 494 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 67 | 433 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 67 | 433 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 67 | 433 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 67 | 433 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 7e-18 | 118 | 431 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
