Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma17g13550.1 |
Family | PL1 |
Protein Properties | Length: 407 Molecular Weight: 44434 Isoelectric Point: 7.2162 |
Chromosome | Chromosome/Scaffold: 17 Start: 10364995 End: 10367323 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 126 | 325 | 0 |
WIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTISDGDGVSIFGGSHVWVDHCSLSN CNDGLIDAIHGSTGITISNNYMTHHDKVMLLGHSDSYTQDKSMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVA |
Full Sequence |
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Protein Sequence Length: 407 Download |
MATTFLSLLF LLFSLLTPTL ISSSPVQDPE FVAQEVHRKI NASVARRNLG YLSCATGNPI 60 DDCWRCDPNW EKNRQRLADC AIGFGKNAIG GKNGKIYVVT DSGDDDPVTP KPGTLRYAVI 120 QDEPLWIIFA RDMVIKLKEE LIMNSFKTID GRGASVHIAG GPCITIQYVT NVIIHGINIH 180 DCKQGGNAMV RDSPRHYGWR TISDGDGVSI FGGSHVWVDH CSLSNCNDGL IDAIHGSTGI 240 TISNNYMTHH DKVMLLGHSD SYTQDKSMQV TIAFNHFGEG LVQRMPRCRH GYFHVVNNDY 300 THWEMYAIGG SANPTINSQG NRFVAPDDRF SKEVTKHEDA PESEWKGWNW RSEGDLLVNG 360 AFFTASGAGA SSSYARASSL SARPSSLVGS ITTGAGALSC RKGSRC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.008 | 160 | 245 | 96 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
COG3866 | PelB | 4.0e-27 | 145 | 323 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-76 | 138 | 323 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-83 | 132 | 327 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABV32549.1 | 0 | 17 | 406 | 23 | 413 | pectase lyase [Prunus persica] |
GenBank | ACU21247.1 | 0 | 1 | 406 | 1 | 406 | unknown [Glycine max] |
DDBJ | BAE48664.1 | 0 | 17 | 406 | 23 | 413 | Pectate lyase [Prunus mume] |
RefSeq | XP_002318694.1 | 0 | 17 | 406 | 16 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322215.1 | 0 | 17 | 406 | 16 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 58 | 399 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 58 | 399 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 6e-20 | 77 | 324 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000001 | 136 | 397 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000001 | 136 | 397 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |