y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma17g15070.1 |
Family | CE8 |
Protein Properties | Length: 355 Molecular Weight: 39189.5 Isoelectric Point: 8.6705 |
Chromosome | Chromosome/Scaffold: 17 Start: 11802980 End: 11806588 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 52 | 344 | 0 |
ITVDVNGGAHFRSVKAAVNAVPENNRMNVLIQISAGYYIEKVVVPVTKPYITFQGAGRDVTVIEWHDRASDPGPNGQQLRTYRTASVTVFANYFSARNIS FKNTAPAPMPGMEGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCRLHSIATRFGSIAAQDRQFPYEKTGFS FVRCKVTGTGPIYVGRAMGQYSRIVYAYTYFDGIVAHGGWDDIDWNTSNNNKTVFFGVYKCWGPGAAAIRGVPLAQELDFESAHPFLVKSFVN |
Full Sequence |
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Protein Sequence Length: 355 Download |
MAPLFISMQM LLLVFTCILL HVTCTTYHDS TPKTVPSTNS SKWVGPIGHR VITVDVNGGA 60 HFRSVKAAVN AVPENNRMNV LIQISAGYYI EKVVVPVTKP YITFQGAGRD VTVIEWHDRA 120 SDPGPNGQQL RTYRTASVTV FANYFSARNI SFKNTAPAPM PGMEGWQAAA FRISGDKAYF 180 SGCGFYGAQD TLCDDAGRHY FKECYIEGSI DFIFGNGRSM YKDCRLHSIA TRFGSIAAQD 240 RQFPYEKTGF SFVRCKVTGT GPIYVGRAMG QYSRIVYAYT YFDGIVAHGG WDDIDWNTSN 300 NNKTVFFGVY KCWGPGAAAI RGVPLAQELD FESAHPFLVK SFVNGRHWIA PSDA* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 5.0e-104 | 50 | 351 | 304 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 4.0e-104 | 51 | 354 | 312 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 3.0e-110 | 48 | 349 | 304 | + pectinesterase | ||
PLN02682 | PLN02682 | 8.0e-134 | 2 | 351 | 368 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 4 | 354 | 354 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD64977.1 | 0 | 5 | 354 | 13 | 360 | pectinesterase family protein [Brassica oleracea] |
GenBank | ABD65006.1 | 0 | 42 | 354 | 33 | 344 | pectinesterase family protein [Brassica oleracea] |
EMBL | CBI31927.1 | 0 | 1 | 354 | 1 | 349 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266321.1 | 0 | 35 | 354 | 34 | 356 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303355.1 | 0 | 42 | 351 | 6 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 6e-37 | 41 | 349 | 2 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-29 | 47 | 349 | 2 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 9e-18 | 59 | 226 | 41 | 217 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 4e-16 | 51 | 228 | 7 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 4e-16 | 51 | 228 | 7 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |