| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma18g01560.1 |
| Family | PL1 |
| Protein Properties | Length: 406 Molecular Weight: 44702.9 Isoelectric Point: 8.744 |
| Chromosome | Chromosome/Scaffold: 18 Start: 857726 End: 860138 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 126 | 324 | 0 |
| IIFKRDMVIKLKQELMMNSFKTIDGRGVSVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAYVRDSPTHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNC RDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDTFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSAAPTINSQGNRFLA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 406 Download |
| MEIPIPIPLS SMLLFLLLVP CCICSSPLQD PELVVEDVQK SINASRRNLA FLSCGTGNPI 60 DDCWRCDPNW EKNRKRLADC SIGFGKHAVG GRDGKLYVVT DPGDHPVNPK PGTLRYGVIQ 120 EEPLWIIFKR DMVIKLKQEL MMNSFKTIDG RGVSVHIAGG PCITIQYVTN IIIHGINIHD 180 CKQGGNAYVR DSPTHYGWRT LSDGDGVSIF GGSHVWVDHC SLSNCRDGLI DAIHGSTAIT 240 ISNNYMTHHN KVMLLGHSDT FTRDKNMQVT IAFNHFGEGL VQRMPRCRHG YFHVVNNDYT 300 HWRMYAIGGS AAPTINSQGN RFLAPNDNTF KEVTKRENSP QSKWKNWNWR SNGDLMLNGA 360 FFTASGAGAS SSYARASSLA AKSSSLVSSI TASAGSLRCR KGSRC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 2.0e-25 | 144 | 322 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-68 | 137 | 322 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 7.0e-79 | 131 | 326 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK94358.1 | 0 | 5 | 405 | 1 | 402 | unknown [Populus trichocarpa] |
| DDBJ | BAB59066.1 | 0 | 26 | 405 | 29 | 409 | pectate lyase [Salix gilgiana] |
| RefSeq | NP_564906.1 | 0 | 20 | 405 | 22 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002285340.1 | 0 | 25 | 405 | 22 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311747.1 | 0 | 5 | 405 | 1 | 402 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 58 | 395 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 58 | 395 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-17 | 126 | 324 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_B | 0.000000000000006 | 186 | 396 | 120 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pe9_A | 0.000000000000006 | 186 | 396 | 120 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
