| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma18g14640.1 |
| Family | GH28 |
| Protein Properties | Length: 443 Molecular Weight: 48150.7 Isoelectric Point: 7.8363 |
| Chromosome | Chromosome/Scaffold: 18 Start: 14497918 End: 14503318 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 72 | 417 | 0 |
| RRGGTVLYVPPGVYLTESFNLTSHMTLYLAAGAVIKATQELGNWPLIVPLPSYGRGRELPGGRYMSFIHGDGLSDVVITGENGTIDGQGDVWWNMWRQRT LQFTRPNLVEFVNSQDIIISNVIFKNSPFWNIHPVYCSNVVVRYVTILAPRDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSYG ITIRRVTGSSPFAGIAIGSETSGGVENVLAEHINLFNMGVGIHIKTNSGRGGLIKNITVAHVYVENARQGIKIAGDVGGHPDEKFNPNALPVVKGITIKN VWGVKVNQAGLIHGLRNSPFTDVCLSDINFHGMEGPRSPSWKCSDV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 443 Download |
| MLFSPFLTLT FFLLFSSSVA AIYSAATCSN IVPLRYRSDR ISITDFGGVG DGRTLNTKAF 60 RAAVYRIQHL RRRGGTVLYV PPGVYLTESF NLTSHMTLYL AAGAVIKATQ ELGNWPLIVP 120 LPSYGRGREL PGGRYMSFIH GDGLSDVVIT GENGTIDGQG DVWWNMWRQR TLQFTRPNLV 180 EFVNSQDIII SNVIFKNSPF WNIHPVYCSN VVVRYVTILA PRDSPNTDGI DPDSSSNVCI 240 EDSYISTGDD LVAVKSGWDE YGIAYGRPSY GITIRRVTGS SPFAGIAIGS ETSGGVENVL 300 AEHINLFNMG VGIHIKTNSG RGGLIKNITV AHVYVENARQ GIKIAGDVGG HPDEKFNPNA 360 LPVVKGITIK NVWGVKVNQA GLIHGLRNSP FTDVCLSDIN FHGMEGPRSP SWKCSDVFGF 420 AHQVSPWPCS QLSSQEPGSC AI* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-25 | 20 | 429 | 434 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03003 | PLN03003 | 4.0e-26 | 38 | 399 | 376 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 1.0e-27 | 41 | 403 | 373 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-33 | 138 | 417 | 290 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 6.0e-58 | 42 | 366 | 355 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACC91250.1 | 0 | 7 | 434 | 4 | 433 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
| EMBL | CBI34471.1 | 0 | 6 | 441 | 9 | 444 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_194113.1 | 0 | 7 | 434 | 4 | 433 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002304552.1 | 0 | 34 | 441 | 1 | 409 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509949.1 | 0 | 12 | 441 | 15 | 443 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 2.99878e-43 | 40 | 403 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 2.99878e-43 | 40 | 403 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 2.99878e-43 | 40 | 403 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 2.99878e-43 | 40 | 403 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.000000000000001 | 84 | 344 | 51 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
