| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma18g18895.1 |
| Family | GH28 |
| Protein Properties | Length: 277 Molecular Weight: 30552.4 Isoelectric Point: 9.7141 |
| Chromosome | Chromosome/Scaffold: 18 Start: 20402892 End: 20404845 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 149 | 261 | 3e-25 |
| NGNGVRIKIWHGTPGTTTMIDMHFKDIKMVNVMNPIIIDKEYFNKHGYFGSSIISPKKIKIRKVTFKNIIGTSATQEGVVLVCSNDVPCEDVVLSDIDLK FNGIIATAKLANV | |||
| Full Sequence |
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| Protein Sequence Length: 277 Download |
| MTTFALLLLL ACFFKAQPQV FDISKYRATP NGNITQLSSY SCTISLYRII RVPQDPSHLN 60 GDAQWVKFTY VNFFTLYGRG TFDGQGAIAW IKIFHVNVLG CNNITFTNFN IIAPATSLNR 120 NEIHIGRSTQ VNITNTNIAI GDDCISLGNG NGVRIKIWHG TPGTTTMIDM HFKDIKMVNV 180 MNPIIIDKEY FNKHGYFGSS IISPKKIKIR KVTFKNIIGT SATQEGVVLV CSNDVPCEDV 240 VLSDIDLKFN GIIATAKLAN VKPTTQGKSL PRLNLA* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 4.0e-21 | 39 | 272 | 302 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 7.0e-23 | 53 | 256 | 283 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 3.0e-25 | 43 | 247 | 288 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-31 | 60 | 262 | 282 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-39 | 45 | 272 | 311 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO62938.1 | 0 | 7 | 267 | 11 | 386 | polygalactorunase PG11 precursor [Medicago sativa] |
| EMBL | CAA72003.1 | 0 | 1 | 276 | 7 | 392 | polygalacturonase [Medicago sativa] |
| Swiss-Prot | Q40312 | 0 | 7 | 267 | 11 | 386 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| RefSeq | XP_002274096.1 | 0 | 50 | 272 | 92 | 389 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282563.1 | 0 | 50 | 273 | 93 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Signal Peptide | ||||
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| Cleavage Site | ||||
| 18 | ||||
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FK000680 | 192 | 123 | 269 | 4.00001e-40 |
| GO028264 | 219 | 96 | 269 | 3e-39 |
| EC947475 | 226 | 92 | 272 | 4e-38 |
| EC939231 | 226 | 92 | 272 | 4e-38 |
| EV261373 | 202 | 113 | 269 | 2e-36 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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