| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma18g19586.1 |
| Family | GH28 |
| Protein Properties | Length: 882 Molecular Weight: 96354.7 Isoelectric Point: 5.3269 |
| Chromosome | Chromosome/Scaffold: 18 Start: 21352907 End: 21359553 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 514 | 843 | 0 |
| ACSTPKSVLLIPQGRRYLVNATRFKGPCADKLIIQIDGTLVAPDEPKNWDPKLPRVWLDFSKLNKTVFQGSGVIDGSGSKWWAASCKKNKSNPCKGAPTA FTIDTSSSIRVKGLTIQNSQQMHFTISRCDSVRITSVKVSAPGDSPNTDGIHISESTNVIIQDSKIGTGDDCISIVNASSNIKMKRIYCGPGHGISIGSL GKDNSTGIVTKVILDTAVLRETTNGVRIKTWQGGSGYVRGVRFQNVRVENVSNPIIIDQFYCDSPTSCENQTTAVEISEVMYQNISGTTMSAKAIKFDCS DSVPCNKLVLSNVDLEKQDGSVETYCHSAQ | |||
| Full Sequence |
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| Protein Sequence Length: 882 Download |
| MGLRGIRESP TTFTSVIAVC TNALFFKEGV QVHCGVIKFG FSCNVFMGDA LVGFYTQVGQ 60 CGVALQLFDV PERNLAVWNV MLRGLCELGR VKVEDLLGFY LSRMRFEVWG KKSSIRSWVG 120 LLNLCSRSGE LCLGKQVHCR VMKLGFNEGS VHVQSALIDM YGKCRDIESS VAVFECLPER 180 TLDCFNSLMT SLSYCDAVDD VAELFGLMVD EGLVPDGVTL STTLKALSVS ALASFTSSQL 240 MHCYALKSGL GEDAVVAYSS FSKRFTSMIN AYARNGMGKE GIAMLQAMTE RGLKPDDVTF 300 LCALNGCNHT GLVEEGRIVF ESMKSLHGVD PDRRHFSCTM DLFCRAGLLH EAEEFLLQSQ 360 GKGEYFMWSS LLRSCRVHKN EEVGTKAAQV LVELDPDDPA VWLQASNFYA EIGKFDASRQ 420 IREVSLARKM TREIGHTYGV AGSIMCDNIG MLEELKSLEA LDIEEEENEV ELSDIPSWRS 480 ERGGKVLVNI DSFGAAGDGE SDDTEALQKA WGVACSTPKS VLLIPQGRRY LVNATRFKGP 540 CADKLIIQID GTLVAPDEPK NWDPKLPRVW LDFSKLNKTV FQGSGVIDGS GSKWWAASCK 600 KNKSNPCKGA PTAFTIDTSS SIRVKGLTIQ NSQQMHFTIS RCDSVRITSV KVSAPGDSPN 660 TDGIHISEST NVIIQDSKIG TGDDCISIVN ASSNIKMKRI YCGPGHGISI GSLGKDNSTG 720 IVTKVILDTA VLRETTNGVR IKTWQGGSGY VRGVRFQNVR VENVSNPIII DQFYCDSPTS 780 CENQTTAVEI SEVMYQNISG TTMSAKAIKF DCSDSVPCNK LVLSNVDLEK QDGSVETYCH 840 SAQGFPYGVV HPSADCLSSS DKTSQIEEST TEEEDIRHIE L* 900 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 3.0e-88 | 488 | 860 | 381 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 4.0e-89 | 489 | 833 | 348 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-100 | 515 | 829 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-117 | 488 | 852 | 368 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-143 | 479 | 860 | 384 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF79584.1 | 0 | 1 | 881 | 204 | 1161 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
| GenBank | AAF79584.1 | 7e-35 | 5 | 300 | 107 | 420 | AC007945_4 F28C11.9 [Arabidopsis thaliana] |
| EMBL | CAN65318.1 | 0 | 6 | 881 | 208 | 1052 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI28554.1 | 1e-27 | 1 | 323 | 102 | 407 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI28554.1 | 0 | 6 | 878 | 208 | 1108 | unnamed protein product [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 4e-21 | 560 | 828 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 4e-21 | 560 | 828 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 4e-21 | 560 | 828 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 4e-21 | 560 | 828 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 4e-21 | 560 | 828 | 56 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| FE686036 | 289 | 438 | 726 | 0 |
| EV271942 | 220 | 500 | 719 | 0 |
| FF399654 | 242 | 438 | 679 | 0 |
| FP038137 | 219 | 562 | 780 | 0 |
| FE686037 | 208 | 675 | 882 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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