| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma18g19670.1 |
| Family | GH28 |
| Protein Properties | Length: 539 Molecular Weight: 58628.3 Isoelectric Point: 7.758 |
| Chromosome | Chromosome/Scaffold: 18 Start: 21375290 End: 21380954 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 148 | 493 | 0 |
| ACKIESSTMLVPADYAFFVGPISFSGPYCKPSIVFQLDGTIVAPTSPKAWGKGLLQWLEFSKLVGITIQGNGIIDGRGSVWWQDNQYDDPIDDEEKLIVP LNHTVGSPSPPLPIQSEMGGKMPSVKPTALRFYGSFNPTVTGITIQNSPQCHLKFDNCNGVMVHDVTISSPGDSPNTDGIHLQNSKDVLIYSSSMACGDD CISIQTGCSNIYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVELPIVIDQFYCDKRTCKNQT SAVSLAGINYERIRGTYTVKPVHFACSDNLPCVDVSLTSVELKPIQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 539 Download |
| MSGLSFRGFT YMLLIAFLIW SFNFEACIAR RGKHWRQSRD VSASVYKKKG KNYGNAHNKY 60 HGGGSKSKPP SSHKGTPTLP KPPPQHKNTP SPPYPTPPSD DTPTTPPPKA YNGGGHSSAT 120 TFNVLDFGAK GDGKSDDTKA FQEAWAEACK IESSTMLVPA DYAFFVGPIS FSGPYCKPSI 180 VFQLDGTIVA PTSPKAWGKG LLQWLEFSKL VGITIQGNGI IDGRGSVWWQ DNQYDDPIDD 240 EEKLIVPLNH TVGSPSPPLP IQSEMGGKMP SVKPTALRFY GSFNPTVTGI TIQNSPQCHL 300 KFDNCNGVMV HDVTISSPGD SPNTDGIHLQ NSKDVLIYSS SMACGDDCIS IQTGCSNIYV 360 HNVNCGPGHG ISIGSLGKDN TRACVSNITV RDVNMHNTMN GVRIKTWQGG SGSVQGVLFS 420 NIQVSEVELP IVIDQFYCDK RTCKNQTSAV SLAGINYERI RGTYTVKPVH FACSDNLPCV 480 DVSLTSVELK PIQEQYHLYN PFCWQTYGEL KTPTVPPIDC LQIGKPTNNR IQTDHDLC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 8.0e-81 | 115 | 490 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-82 | 151 | 489 | 340 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN03010 | PLN03010 | 1.0e-82 | 122 | 489 | 373 | + polygalacturonase | ||
| PLN02218 | PLN02218 | 1.0e-90 | 118 | 490 | 378 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-107 | 117 | 517 | 406 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK95830.1 | 0 | 1 | 538 | 4 | 516 | unknown [Populus trichocarpa] |
| RefSeq | NP_564758.2 | 0 | 4 | 538 | 7 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002266600.1 | 0 | 1 | 538 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311773.1 | 0 | 1 | 538 | 4 | 517 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525361.1 | 0 | 1 | 538 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 6e-24 | 198 | 441 | 96 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 4e-21 | 195 | 489 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 4e-21 | 195 | 489 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 4e-21 | 195 | 489 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 4e-21 | 195 | 489 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
