y
Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma18g27090.2 |
Family | PL4 |
Protein Properties | Length: 686 Molecular Weight: 78140.3 Isoelectric Point: 6.5347 |
Chromosome | Chromosome/Scaffold: 18 Start: 31174361 End: 31183309 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 53 | 664 | 0 |
NSNNREQLVVDNGIVAVTFSRPEGYILGISYNGIDNILEEENEDQDRGYLDVVWNTPGKPSNFQRIHGTIFSVIAADENMVELSFSKSWTSSLNGSSVPM NIDIRYILRSGDSGFYSYAIFDRPEGLPAVEIDQIRIVFKLNKDRFNYMAISDERQRSMPTMRDRETGQILAYPEAVLLTRPINPEFRGEVDDKYQYSCE NKVNTVHGWISVDAADAPPVGFWMITPSSEFRNAGPIKQDLTSHVGPITLSMFVSTHYAGKEVTMAFQEGEIYKKVFGPVFAYVNNASNEDDTLSLWSDA VQQQSKEVRSWPYDFPKSVDFIPPNQRGIVLGRLLVQDRYFRGGRLLYANNSYVGLALPGDEGSWQIESKGYQFWTQADTKGFFLINNVVPGDYNLYAWV PGFIGDYRYNATITITPGGVIRLDSLVYVPPRNGPTIWEIGFPDRKAAEFYVPEPYPTLMNKLYNEQRRDKFRQYGLWERYTDLYPNDDLVYTVGISKYR KDWFFAHVTRSTGNKTYQPTTWQIIFEHPNQIIRGNYTLQLALACTADADLQVRVNDPSANPPDFATGKIGGDSAIARHGVHGLYRLFSINVPSDRFVKG TNTIYLRQSRAM |
Full Sequence |
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Protein Sequence Length: 686 Download |
MKEKVFFLWW FGMTLRLCFL LGASCSEKTT LRRGLRETLA KQSTTSKSGV MVNSNNREQL 60 VVDNGIVAVT FSRPEGYILG ISYNGIDNIL EEENEDQDRG YLDVVWNTPG KPSNFQRIHG 120 TIFSVIAADE NMVELSFSKS WTSSLNGSSV PMNIDIRYIL RSGDSGFYSY AIFDRPEGLP 180 AVEIDQIRIV FKLNKDRFNY MAISDERQRS MPTMRDRETG QILAYPEAVL LTRPINPEFR 240 GEVDDKYQYS CENKVNTVHG WISVDAADAP PVGFWMITPS SEFRNAGPIK QDLTSHVGPI 300 TLSMFVSTHY AGKEVTMAFQ EGEIYKKVFG PVFAYVNNAS NEDDTLSLWS DAVQQQSKEV 360 RSWPYDFPKS VDFIPPNQRG IVLGRLLVQD RYFRGGRLLY ANNSYVGLAL PGDEGSWQIE 420 SKGYQFWTQA DTKGFFLINN VVPGDYNLYA WVPGFIGDYR YNATITITPG GVIRLDSLVY 480 VPPRNGPTIW EIGFPDRKAA EFYVPEPYPT LMNKLYNEQR RDKFRQYGLW ERYTDLYPND 540 DLVYTVGISK YRKDWFFAHV TRSTGNKTYQ PTTWQIIFEH PNQIIRGNYT LQLALACTAD 600 ADLQVRVNDP SANPPDFATG KIGGDSAIAR HGVHGLYRLF SINVPSDRFV KGTNTIYLRQ 660 SRAMNPFQGV MYDYIRLERP PLTQI* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.007 | 428 | 476 | 49 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 1.0e-29 | 378 | 478 | 101 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 4.0e-48 | 490 | 678 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 8.0e-74 | 59 | 345 | 293 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-78 | 59 | 243 | 187 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS99719.1 | 0 | 50 | 680 | 52 | 674 | At2g22620 [Arabidopsis thaliana] |
RefSeq | NP_179847.1 | 0 | 50 | 680 | 52 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 17 | 680 | 21 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 60 | 683 | 1 | 620 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527245.1 | 0 | 60 | 683 | 2 | 621 | lyase, putative [Ricinus communis] |