Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma18g38430.1 |
Family | PL1 |
Protein Properties | Length: 452 Molecular Weight: 49567 Isoelectric Point: 8.4074 |
Chromosome | Chromosome/Scaffold: 18 Start: 45898168 End: 45905010 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 165 | 369 | 0 |
IQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIAYGACITIQFVTNVIIHGLHIHDCKVTGNAMVRSSPSHYGWRTLADGDGISIFGSSHIWID HNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSANPTINSQ GNRYL |
Full Sequence |
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Protein Sequence Length: 452 Download |
MKVLSPKLFT LSILLAALVL ASANAVSGNE MQKHEATESR DVVEEEKLQV QSLKNSSMAE 60 RSGSALNEHA VDNPEEIASM VDESIRNYTA RRNLNFFSCG SGNPIDDCWR CDKRWYARRK 120 RLANCGIGFG RNAIGGRDGR YYVVSDPGDD DPVNPKPGTL RHAVIQDRPL WIVFKRDMVI 180 TLKQELIMNS FKTIDGRGVN VHIAYGACIT IQFVTNVIIH GLHIHDCKVT GNAMVRSSPS 240 HYGWRTLADG DGISIFGSSH IWIDHNSLSN CADGLVDAVM GSTAITISNN YFTHHNEVML 300 LGHSDSYVRD KQMQVTIAYN HFGEGLIQRM PRCRHGYFHV VNNDYTHWVM YAIGGSANPT 360 INSQGNRYLA PLNPFAKEVT KRVDTGSSVW KSWNWRSEGD LLLNGAFFTS SGAGAAASYA 420 RASSLGAKSS SLVGTITSGA GVLNCRRGAM C* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam05048 | NosD | 0.005 | 193 | 322 | 142 | + Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain. | ||
COG3866 | PelB | 2.0e-26 | 190 | 366 | 189 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-70 | 183 | 368 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-81 | 177 | 371 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN75298.1 | 0 | 26 | 451 | 22 | 445 | hypothetical protein [Vitis vinifera] |
EMBL | CBI33346.1 | 0 | 49 | 451 | 33 | 430 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002265100.1 | 0 | 26 | 451 | 22 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002285639.1 | 0 | 49 | 451 | 35 | 432 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002521130.1 | 0 | 46 | 451 | 36 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 103 | 443 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 103 | 443 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-17 | 172 | 359 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000002 | 251 | 345 | 190 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000009 | 193 | 442 | 151 | 406 | A Chain A, Bacillus Subtilis Pectate Lyase |