| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma18g49090.1 |
| Family | PL1 |
| Protein Properties | Length: 441 Molecular Weight: 49096.2 Isoelectric Point: 8.2185 |
| Chromosome | Chromosome/Scaffold: 18 Start: 58477403 End: 58480577 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 161 | 359 | 0 |
| IFAQSMVITLKFELLISSDKTIDGRGANVVIKGGAGLAMQFVNNIIIHGIRINKIKSMEGTMLRDLWNHVGIRTRCDGDAVSIFGSSNIWLDHLSLSECE DGLIDIVQGSTGITISNCHMTKHNDVMLFGASDTYAGDKIMQVTVAFNHFGQGLIQRMPRCRWGFVHVINNDYTHWLMYAIGGSSEPTILSQGNRFIAP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 441 Download |
| MAGSASKVTF IFLVAFAISI PCLEAGIAEF DDFLKAQADE AHEIALRSYE PDPINVTAEF 60 NIHVHRALME ESNDTRRELK QKYRGPCLAT NPIDRCWRCR KDWAQDRYRL ASCGKGFGRR 120 AVGGLHGKIY VVTDSSDDEP INPRPGTLRY GVLQREPLWI IFAQSMVITL KFELLISSDK 180 TIDGRGANVV IKGGAGLAMQ FVNNIIIHGI RINKIKSMEG TMLRDLWNHV GIRTRCDGDA 240 VSIFGSSNIW LDHLSLSECE DGLIDIVQGS TGITISNCHM TKHNDVMLFG ASDTYAGDKI 300 MQVTVAFNHF GQGLIQRMPR CRWGFVHVIN NDYTHWLMYA IGGSSEPTIL SQGNRFIAPN 360 NNAAKEITHR DYAPPEEWSK WQWKSENDLF MNGATFLQSG SPLGKLPFNK GLMMKPRPGA 420 EANRLTRFAG ALNCKVGKPC * 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 2.0e-19 | 26 | 79 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 2.0e-24 | 171 | 356 | 201 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-58 | 171 | 356 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 9.0e-70 | 166 | 360 | 206 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAA86241.1 | 0 | 1 | 440 | 1 | 450 | pectate lyase homolog [Medicago sativa] |
| GenBank | ACU23277.1 | 0 | 1 | 440 | 5 | 443 | unknown [Glycine max] |
| RefSeq | XP_002311599.1 | 0 | 12 | 440 | 1 | 429 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330086.1 | 0 | 3 | 440 | 2 | 435 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002520133.1 | 0 | 6 | 440 | 7 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 91 | 432 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 91 | 432 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 2e-19 | 121 | 347 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 2e-16 | 174 | 356 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1jta_A | 0.0000000000001 | 173 | 365 | 82 | 296 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
