Basic Information | |
---|---|
Species | Glycine max |
Cazyme ID | Glyma19g00230.1 |
Family | GH28 |
Protein Properties | Length: 444 Molecular Weight: 47335.1 Isoelectric Point: 6.1556 |
Chromosome | Chromosome/Scaffold: 19 Start: 34956 End: 39628 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 71 | 409 | 0 |
AACKVEGSTMVVPSGSVFLVKPISFSGPNCEPNIVFQLDGKIIAPTSSEAWGSGTLQWLEFSKLNTITIRGKGVIDGQGSVWWNNDSPTYNPTEVMLESN GRLPSTKPTALRFYGSDGVTVTGITIQNSQQTHLKFDSCTNVQVSGISVSSPGDSPNTDGIHLQNSQNVVIYSSTLACGDDCVSIQTGCSDIYVHNVNCG PGHGISIGSLGRENTKACVRNVTVRDVTIQNTLTGVRIKTWQGGSGSVQNIMFSNVQVSGVQTPISIDQYYCDGGRCRNESSAVAVSGIHYVNVKGTYTK EPIYFACSDNLPCSGITLDTIQLESAQETKNSNVPFCWE |
Full Sequence |
---|
Protein Sequence Length: 444 Download |
MKNMNMKLNT IALIIAIAFS VWSSSCTAAR VSHWRKLKAA ASATSFNVLD YGAKGDGHAD 60 DTKAFEDAWA AACKVEGSTM VVPSGSVFLV KPISFSGPNC EPNIVFQLDG KIIAPTSSEA 120 WGSGTLQWLE FSKLNTITIR GKGVIDGQGS VWWNNDSPTY NPTEVMLESN GRLPSTKPTA 180 LRFYGSDGVT VTGITIQNSQ QTHLKFDSCT NVQVSGISVS SPGDSPNTDG IHLQNSQNVV 240 IYSSTLACGD DCVSIQTGCS DIYVHNVNCG PGHGISIGSL GRENTKACVR NVTVRDVTIQ 300 NTLTGVRIKT WQGGSGSVQN IMFSNVQVSG VQTPISIDQY YCDGGRCRNE SSAVAVSGIH 360 YVNVKGTYTK EPIYFACSDN LPCSGITLDT IQLESAQETK NSNVPFCWEA YGELKTTTVP 420 PVECLQRGNP SKEGGINSNI DSC* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 4.0e-82 | 4 | 394 | 397 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03010 | PLN03010 | 5.0e-84 | 46 | 400 | 360 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 9.0e-87 | 78 | 405 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-96 | 42 | 404 | 369 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-113 | 46 | 421 | 380 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 1 | 443 | 1 | 443 | polygalacturonase PG1 [Glycine max] |
GenBank | AAD46484.1 | 0 | 4 | 443 | 1 | 439 | polygalacturonase PG2 [Glycine max] |
GenBank | ACU24545.1 | 0 | 1 | 443 | 1 | 443 | unknown [Glycine max] |
DDBJ | BAH56488.1 | 0 | 4 | 443 | 3 | 510 | polygalacturonase 1 [Prunus persica] |
EMBL | CBI34901.1 | 0 | 37 | 443 | 65 | 483 | unnamed protein product [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-25 | 136 | 405 | 71 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-25 | 136 | 405 | 71 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-25 | 136 | 405 | 71 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-25 | 136 | 405 | 71 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-25 | 136 | 405 | 71 | 331 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |