| Basic Information | |
|---|---|
| Species | Glycine max |
| Cazyme ID | Glyma19g02390.1 |
| Family | PL1 |
| Protein Properties | Length: 444 Molecular Weight: 49143.3 Isoelectric Point: 9.2437 |
| Chromosome | Chromosome/Scaffold: 19 Start: 2110996 End: 2113462 |
| Description | Pectate lyase family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 164 | 363 | 0 |
| IIFQRSMMIKLNQELMISSDKTIDGRGANVVFRDGAGLTIQFVNNVIIHGVRIKNIVPKEGGMIRDSYNHVGLRTKSDGDAISIFGASNVWIDHVSLSNC ADGLIDVIQGSTAITISNCHMTKHNDVMLFGASDSYSGDKIMQITVAFNHFGQGLVQRMPRCRWGFVHVLNNDYTHWMMYAIGGSSGPTILSQGNRFIAP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 444 Download |
| MERIMVGSAT KVAFNLLVTF AIVIPCLEAG IAEFDDFLKA QADEAQKIAL EAYVPVPEDV 60 TDELNFHVHL SLENSTRREL RQRKGRSGKK CVASNPIDTC WRCNKNWAND RYRLAKCGKG 120 FGRRATGGLG GPIYVVTDNS DDDMVNPKPG TIRHAVTQRG PLWIIFQRSM MIKLNQELMI 180 SSDKTIDGRG ANVVFRDGAG LTIQFVNNVI IHGVRIKNIV PKEGGMIRDS YNHVGLRTKS 240 DGDAISIFGA SNVWIDHVSL SNCADGLIDV IQGSTAITIS NCHMTKHNDV MLFGASDSYS 300 GDKIMQITVA FNHFGQGLVQ RMPRCRWGFV HVLNNDYTHW MMYAIGGSSG PTILSQGNRF 360 IAPNNNAAKL ITHRDYAEPQ VWKNWQWQSE MDLFINGAQF IPSGSPIKTT YKKGLLMKPR 420 DGTHASRLTR NSGALNCIVG RPC* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04431 | Pec_lyase_N | 2.0e-17 | 30 | 80 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
| COG3866 | PelB | 3.0e-27 | 177 | 360 | 197 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 9.0e-67 | 176 | 360 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 6.0e-79 | 170 | 364 | 206 | + Amb_all domain. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0030570 | pectate lyase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAA86241.1 | 0 | 5 | 443 | 1 | 450 | pectate lyase homolog [Medicago sativa] |
| GenBank | ACU23277.1 | 0 | 1 | 443 | 1 | 443 | unknown [Glycine max] |
| RefSeq | XP_002311599.1 | 0 | 16 | 443 | 1 | 429 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330086.1 | 0 | 6 | 443 | 1 | 435 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002520133.1 | 0 | 4 | 443 | 1 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 95 | 435 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 95 | 435 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 1e-21 | 126 | 362 | 22 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 7e-16 | 173 | 364 | 71 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1pe9_B | 8e-16 | 173 | 369 | 78 | 296 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
